(126 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR396d_MI0023096_103                                             201   3e-53
mdm-MIR396c_MI0023095_107                                             185   2e-48
mdm-MIR396e_MI0023097_107                                             181   3e-47
ptc-MIR396e_MI0002329_Populus_trichocarpa_miR396e_stem-loop_145        64   8e-12
gma-MIR396g_MI0017921_Glycine_max_miR396g_stem-loop_151                64   8e-12
ptc-MIR396d_MI0002328_Populus_trichocarpa_miR396d_stem-loop_154        64   8e-12
gma-MIR396b_MI0001786_Glycine_max_miR396b_stem-loop_126                64   8e-12
ccl-MIR396_MI0013304_Citrus_clementine_miR396_stem-loop_277            62   3e-11
tcc-MIR396c_MI0017513_Theobroma_cacao_miR396c_stem-loop_152            62   3e-11
vvi-MIR396b_MI0006570_Vitis_vinifera_miR396b_stem-loop_108             62   3e-11
gma-MIR396d_MI0016503_Glycine_max_miR396d_stem-loop_108                58   5e-10
sbi-MIR396c_MI0001540_Sorghum_bicolor_miR396c_stem-loop_162            56   2e-09
gma-MIR396f_MI0017919_Glycine_max_miR396f_stem-loop_151                56   2e-09
gma-MIR396c_MI0010572_Glycine_max_miR396c_stem-loop_117                56   2e-09
rco-MIR396_MI0013418_Ricinus_communis_miR396_stem-loop_124             54   8e-09
osa-MIR396c_MI0001048_Oryza_sativa_miR396c_stem-loop_141               54   8e-09
ptc-MIR396c_MI0002327_Populus_trichocarpa_miR396c_stem-loop_102        54   8e-09
mtr-MIR396a_MI0005621_Medicago_truncatula_miR396a_stem-loop_93         54   8e-09
vvi-MIR396a_MI0006569_Vitis_vinifera_miR396a_stem-loop_116             54   8e-09
bcy-MIR396b_MI0016988_Bruguiera_cylindrica_miR396b_stem-loop_99        52   3e-08
pab-MIR396a_MI0016122_Picea_abies_miR396a_stem-loop_100                52   3e-08
bgy-MIR396b_MI0016984_Bruguiera_gymnorhiza_miR396b_stem-loop_99        52   3e-08
csi-MIR396c_MI0016735_Citrus_sinensis_miR396c_stem-loop_178            50   1e-07
tcc-MIR396e_MI0017515_Theobroma_cacao_miR396e_stem-loop_146            50   1e-07
aly-MIR396b_MI0014582_Arabidopsis_lyrata_miR396b_stem-loop_188         48   5e-07
pta-MIR396_MI0005788_Pinus_taeda_miR396_stem-loop_119                  48   5e-07
ptc-MIR396g_MI0002331_Populus_trichocarpa_miR396g_stem-loop_168        48   5e-07
tcc-MIR396d_MI0017514_Theobroma_cacao_miR396d_stem-loop_182            48   5e-07
ath-MIR396b_MI0001014_Arabidopsis_thaliana_miR396b_stem-loop_135       48   5e-07
bdi-MIR396e_MI0018108_Brachypodium_distachyon_miR396e_stem-loop_201    46   2e-06
zma-MIR396e_MI0013225_Zea_mays_miR396e_stem-loop_166                   46   2e-06
zma-MIR396f_MI0013226_Zea_mays_miR396f_stem-loop_117                   46   2e-06
smo-MIR396_MI0006060_Selaginella_moellendorffii_miR396_stem-loop...    44   8e-06
ghr-MIR396a_MI0005650_Gossypium_hirsutum_miR396a_stem-loop_136         44   8e-06
ghr-MIR396b_MI0005651_Gossypium_hirsutum_miR396b_stem-loop_135         44   8e-06
csi-MIR396b_MI0016707_Citrus_sinensis_miR396b_stem-loop_134            44   8e-06
tcc-MIR396a_MI0017511_Theobroma_cacao_miR396a_stem-loop_146            44   8e-06
aqc-MIR396b_MI0012095_Aquilegia_caerulea_miR396b_stem-loop_89          42   3e-05
bna-MIR396a_MI0005773_Brassica_napus_miR396a_stem-loop_117             42   3e-05
bgy-MIR396a_MI0016983_Bruguiera_gymnorhiza_miR396a_stem-loop_128       40   1e-04
tcc-MIR396b_MI0017512_Theobroma_cacao_miR396b_stem-loop_151            40   1e-04
ssl-MIR396_MI0019351_Salvia_sclarea_miR396_stem-loop_89                40   1e-04
csi-MIR396a_MI0016706_Citrus_sinensis_miR396a_stem-loop_153            40   1e-04
sbi-MIR396a_MI0001539_Sorghum_bicolor_miR396a_stem-loop_125            40   1e-04
ptc-MIR396a_MI0002325_Populus_trichocarpa_miR396a_stem-loop_123        40   1e-04
osa-MIR396b_MI0001047_Oryza_sativa_miR396b_stem-loop_116               40   1e-04
ptc-MIR396b_MI0002326_Populus_trichocarpa_miR396b_stem-loop_132        40   1e-04
ath-MIR396a_MI0001013_Arabidopsis_thaliana_miR396a_stem-loop_151       40   1e-04
zma-MIR396g_MI0013227_Zea_mays_miR396g_stem-loop_114                   40   1e-04
ssp-MIR396_MI0018195_Saccharum_ssp._miR396_stem-loop_95                40   1e-04
aqc-MIR396a_MI0012094_Aquilegia_caerulea_miR396a_stem-loop_122         40   1e-04
mdm-MIR396b_MI0023094_168                                              40   1e-04
zma-MIR396a_MI0001801_Zea_mays_miR396a_stem-loop_137                   40   1e-04
gma-MIR396i_MI0018680_Glycine_max_miR396i_stem-loop_135                40   1e-04
bcy-MIR396a_MI0016987_Bruguiera_cylindrica_miR396a_stem-loop_128       40   1e-04
amg-MIR396_MI0018987_Acacia_mangium_miR396_stem-loop_145               40   1e-04
bdi-MIR396c_MI0018101_Brachypodium_distachyon_miR396c_stem-loop_153    40   1e-04
vvi-MIR396d_MI0006571_Vitis_vinifera_miR396d_stem-loop_120             40   1e-04
sbi-MIR396b_MI0001538_Sorghum_bicolor_miR396b_stem-loop_128            40   1e-04
mtr-MIR396b_MI0005622_Medicago_truncatula_miR396b_stem-loop_95         40   1e-04
zma-MIR396b_MI0001800_Zea_mays_miR396b_stem-loop_136                   40   1e-04
gma-MIR396e_MI0016586_Glycine_max_miR396e_stem-loop_114                40   1e-04
sof-MIR396_MI0001755_Saccharum_officinarum_miR396_stem-loop_134        40   1e-04
aau-MIR396_MI0018981_Acacia_auriculiformis_miR396_stem-loop_146        40   1e-04
gma-MIR396a_MI0001785_Glycine_max_miR396a_stem-loop_140                40   1e-04
zma-MIR396h_MI0013228_Zea_mays_miR396h_stem-loop_124                   40   1e-04
bdi-MIR396d_MI0018096_Brachypodium_distachyon_miR396d_stem-loop_152    40   1e-04
pab-MIR396c_MI0016124_Picea_abies_miR396c_stem-loop_143                40   1e-04
lja-MIR396_MI0010581_Lotus_japonicus_miR396_stem-loop_108              40   1e-04
vvi-MIR396c_MI0007955_Vitis_vinifera_miR396c_stem-loop_108             40   1e-04
osa-MIR396a_MI0001046_Oryza_sativa_miR396a_stem-loop_154               40   1e-04
gma-MIR396h_MI0018679_Glycine_max_miR396h_stem-loop_148                40   1e-04
aly-MIR396a_MI0014581_Arabidopsis_lyrata_miR396a_stem-loop_172         40   1e-04
pab-MIR396b_MI0016123_Picea_abies_miR396b_stem-loop_116                38   5e-04
mdm-MIR396a_MI0023093_149                                              38   5e-04

>mdm-MIR396d_MI0023096_103
          Length = 103

 Score =  201 bits (101), Expect = 3e-53
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                       
Query: 13  gccatgcttttccacagctttcttgaacttcaattctmtgctgtctaaatctctttccgg 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gccatgcttttccacagctttcttgaacttcaattctmtgctgtctaaatctctttccgg 60

                                                      
Query: 73  attagcaccatggaagctcaagaaagctgtgggagaccatggc 115
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attagcaccatggaagctcaagaaagctgtgggagaccatggc 103


>mdm-MIR396c_MI0023095_107
          Length = 107

 Score =  185 bits (93), Expect = 2e-48
 Identities = 101/105 (96%)
 Strand = Plus / Plus

                                                                       
Query: 13  gccatgcttttccacagctttcttgaacttcaattctmtgctgtctaaatctctttccgg 72
           ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||
Sbjct: 3   gccatgcttttccacagctttcttgaacttcaattctctgctgtctaaatmtctttcagg 62

                                                        
Query: 73  attagcaccatggaagctcaagaaagctgtgggagaccatggcaa 117
           | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  actagcaccatggaagctcaagaaagctgtgggagaccatggcaa 107


>mdm-MIR396e_MI0023097_107
          Length = 107

 Score =  181 bits (91), Expect = 3e-47
 Identities = 101/105 (96%)
 Strand = Plus / Plus

                                                                       
Query: 13  gccatgcttttccacagctttcttgaacttcaattctmtgctgtctaaatctctttccgg 72
           ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||
Sbjct: 3   gccatgcttttccacagctttcttgaacttcaattctctgctgtctaaatktctttcagg 62

                                                        
Query: 73  attagcaccatggaagctcaagaaagctgtgggagaccatggcaa 117
           | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  actagcaccatggaagctcaagaaagctgtgggagaccatggcaa 107


>ptc-MIR396e_MI0002329_Populus_trichocarpa_miR396e_stem-loop_145
          Length = 145

 Score = 64.3 bits (32), Expect = 8e-12
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 75  tagcaccatggaagctcaagaaagctgtgggagaccatgg 114
           |||| ||||||||||||||||||||||||||||| |||||
Sbjct: 106 tagcgccatggaagctcaagaaagctgtgggagaacatgg 145



 Score = 58.3 bits (29), Expect = 5e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 15 catgcttttccacagctttcttgaacttc 43
          |||||||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaacttc 32


>gma-MIR396g_MI0017921_Glycine_max_miR396g_stem-loop_151
          Length = 151

 Score = 64.3 bits (32), Expect = 8e-12
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 4  caagtcctcgccatgcttttccacagctttcttgaacttc 43
          |||||||| | |||||||||||||||||||||||||||||
Sbjct: 38 caagtcctggtcatgcttttccacagctttcttgaacttc 77



 Score = 48.3 bits (24), Expect = 5e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  gaagctcaagaaagctgtgggaga 108
           ||||||||||||||||||||||||
Sbjct: 121 gaagctcaagaaagctgtgggaga 144


>ptc-MIR396d_MI0002328_Populus_trichocarpa_miR396d_stem-loop_154
          Length = 154

 Score = 64.3 bits (32), Expect = 8e-12
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 75  tagcaccatggaagctcaagaaagctgtgggagaccatgg 114
           ||||||||||||||||||||||||| |||||||| |||||
Sbjct: 115 tagcaccatggaagctcaagaaagccgtgggagaacatgg 154



 Score = 58.3 bits (29), Expect = 5e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 15 catgcttttccacagctttcttgaacttc 43
          |||||||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaacttc 32


>gma-MIR396b_MI0001786_Glycine_max_miR396b_stem-loop_126
          Length = 126

 Score = 64.3 bits (32), Expect = 8e-12
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 4  caagtcctcgccatgcttttccacagctttcttgaacttc 43
          |||||||| | |||||||||||||||||||||||||||||
Sbjct: 3  caagtcctggtcatgcttttccacagctttcttgaacttc 42



 Score = 56.3 bits (28), Expect = 2e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 85  gaagctcaagaaagctgtgggagaccatggcaattc 120
           ||||||||||||||||||||||||  ||||||||||
Sbjct: 86  gaagctcaagaaagctgtgggagaatatggcaattc 121


>ccl-MIR396_MI0013304_Citrus_clementine_miR396_stem-loop_277
          Length = 277

 Score = 62.3 bits (31), Expect = 3e-11
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 5   aagtcctcgccatgcttttccacagctttcttgaacttc 43
           ||||||| | |||||||||||||||||||||||||||||
Sbjct: 126 aagtcctggtcatgcttttccacagctttcttgaacttc 164



 Score = 58.3 bits (29), Expect = 5e-10
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 80  ccatggaagctcaagaaagctgtgggagaccatggca 116
           |||||| |||||||||||||||||||||| |||||||
Sbjct: 226 ccatgggagctcaagaaagctgtgggagaacatggca 262


>tcc-MIR396c_MI0017513_Theobroma_cacao_miR396c_stem-loop_152
          Length = 152

 Score = 62.3 bits (31), Expect = 3e-11
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                      
Query: 84  ggaagctcaagaaagctgtgggagaccatggcaattctggact 126
           ||||||||||||||||||||||| | ||||||||||| |||||
Sbjct: 108 ggaagctcaagaaagctgtgggaaaacatggcaattcaggact 150



 Score = 60.3 bits (30), Expect = 1e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 13 gccatgcttttccacagctttcttgaactt 42
          ||||||||||||||||||||||||||||||
Sbjct: 12 gccatgcttttccacagctttcttgaactt 41



 Score = 38.4 bits (19), Expect = 5e-04
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                          
Query: 13  gccatgcttttccacagctttcttgaacttc 43
           |||||| ||| ||||||||||||||| ||||
Sbjct: 139 gccatgttttcccacagctttcttgagcttc 109


>vvi-MIR396b_MI0006570_Vitis_vinifera_miR396b_stem-loop_108
          Length = 108

 Score = 62.3 bits (31), Expect = 3e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 13 gccatgcttttccacagctttcttgaacttc 43
          |||||||||||||||||||||||||||||||
Sbjct: 5  gccatgcttttccacagctttcttgaacttc 35



 Score = 48.3 bits (24), Expect = 5e-07
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 13  gccatgcttttccacagctttcttgaacttca 44
           |||||| ||| |||||||||||||||||||||
Sbjct: 106 gccatggtttcccacagctttcttgaacttca 75



 Score = 46.3 bits (23), Expect = 2e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 85  gaagctcaagaaagctgtgggagaccatggc 115
           |||| ||||||||||||||||| ||||||||
Sbjct: 76  gaagttcaagaaagctgtgggaaaccatggc 106


>gma-MIR396d_MI0016503_Glycine_max_miR396d_stem-loop_108
          Length = 108

 Score = 58.3 bits (29), Expect = 5e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 15 catgcttttccacagctttcttgaacttc 43
          |||||||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaacttc 32



 Score = 50.3 bits (25), Expect = 1e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 85  gaagctcaagaaagctgtgggagaccatggcaa 117
           ||||||||||||||||||||||||  |||||||
Sbjct: 76  gaagctcaagaaagctgtgggagaatatggcaa 108


>sbi-MIR396c_MI0001540_Sorghum_bicolor_miR396c_stem-loop_162
          Length = 162

 Score = 56.3 bits (28), Expect = 2e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 4  caagtcctcgccatgcttttccacagctttcttgaacttc 43
          |||||||  ||||||| |||||||||||||||||||||||
Sbjct: 3  caagtccatgccatgcctttccacagctttcttgaacttc 42


>gma-MIR396f_MI0017919_Glycine_max_miR396f_stem-loop_151
          Length = 151

 Score = 56.3 bits (28), Expect = 2e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 16 atgcttttccacagctttcttgaacttc 43
          ||||||||||||||||||||||||||||
Sbjct: 50 atgcttttccacagctttcttgaacttc 77


>gma-MIR396c_MI0010572_Glycine_max_miR396c_stem-loop_117
          Length = 117

 Score = 56.3 bits (28), Expect = 2e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 16 atgcttttccacagctttcttgaacttc 43
          ||||||||||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaacttc 42


>rco-MIR396_MI0013418_Ricinus_communis_miR396_stem-loop_124
          Length = 124

 Score = 54.3 bits (27), Expect = 8e-09
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 tgcttttccacagctttcttgaacttc 43
          |||||||||||||||||||||||||||
Sbjct: 1  tgcttttccacagctttcttgaacttc 27



 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 90  tcaagaaagctgtgggagaccatg 113
           ||||||||||||||||||| ||||
Sbjct: 101 tcaagaaagctgtgggagaacatg 124



 Score = 38.4 bits (19), Expect = 5e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 24  ccacagctttcttgaactt 42
           |||||||||||||||||||
Sbjct: 115 ccacagctttcttgaactt 97


>osa-MIR396c_MI0001048_Oryza_sativa_miR396c_stem-loop_141
          Length = 141

 Score = 54.3 bits (27), Expect = 8e-09
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 13 gccatgcttttccacagctttcttgaacttc 43
          ||||||| |||||||||||||||||||||||
Sbjct: 2  gccatgcctttccacagctttcttgaacttc 32


>ptc-MIR396c_MI0002327_Populus_trichocarpa_miR396c_stem-loop_102
          Length = 102

 Score = 54.3 bits (27), Expect = 8e-09
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 13 gccatgcttttccacagctttcttgaacttc 43
          |||||| ||||||||||||||||||||||||
Sbjct: 2  gccatgtttttccacagctttcttgaacttc 32



 Score = 42.3 bits (21), Expect = 3e-05
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 15  catgcttttccacagctttcttgaacttc 43
           |||||| |||||| |||||||||||||||
Sbjct: 101 catgctattccacggctttcttgaacttc 73


>mtr-MIR396a_MI0005621_Medicago_truncatula_miR396a_stem-loop_93
          Length = 93

 Score = 54.3 bits (27), Expect = 8e-09
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 17 tgcttttccacagctttcttgaacttc 43
          |||||||||||||||||||||||||||
Sbjct: 1  tgcttttccacagctttcttgaacttc 27



 Score = 48.3 bits (24), Expect = 5e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  gaagctcaagaaagctgtgggaga 108
           ||||||||||||||||||||||||
Sbjct: 67  gaagctcaagaaagctgtgggaga 90


>vvi-MIR396a_MI0006569_Vitis_vinifera_miR396a_stem-loop_116
          Length = 116

 Score = 54.3 bits (27), Expect = 8e-09
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 15 catgcttttccacagctttcttgaact 41
          |||||||||||||||||||||||||||
Sbjct: 7  catgcttttccacagctttcttgaact 33



 Score = 50.3 bits (25), Expect = 1e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 85  gaagctcaagaaagctgtgggagaccatggcaa 117
           |||||||||||||||||||||||  ||||||||
Sbjct: 84  gaagctcaagaaagctgtgggaggacatggcaa 116


>bcy-MIR396b_MI0016988_Bruguiera_cylindrica_miR396b_stem-loop_99
          Length = 99

 Score = 52.3 bits (26), Expect = 3e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 81  catggaagctcaagaaagctgtggga 106
           ||||||||||||||||||||||||||
Sbjct: 68  catggaagctcaagaaagctgtggga 93



 Score = 46.3 bits (23), Expect = 2e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 16 atgcttttccacagctttcttgaactt 42
          ||||| |||||||||||||||||||||
Sbjct: 1  atgctattccacagctttcttgaactt 27


>pab-MIR396a_MI0016122_Picea_abies_miR396a_stem-loop_100
          Length = 100

 Score = 52.3 bits (26), Expect = 3e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 12 cgccatgcttttccacagctttcttgaact 41
          ||||||||| ||||||||||||||||||||
Sbjct: 6  cgccatgctcttccacagctttcttgaact 35



 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  agctcaagaaagctgtggga 106
           ||||||||||||||||||||
Sbjct: 64  agctcaagaaagctgtggga 83


>bgy-MIR396b_MI0016984_Bruguiera_gymnorhiza_miR396b_stem-loop_99
          Length = 99

 Score = 52.3 bits (26), Expect = 3e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 81  catggaagctcaagaaagctgtggga 106
           ||||||||||||||||||||||||||
Sbjct: 68  catggaagctcaagaaagctgtggga 93



 Score = 46.3 bits (23), Expect = 2e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 16 atgcttttccacagctttcttgaactt 42
          ||||| |||||||||||||||||||||
Sbjct: 1  atgctattccacagctttcttgaactt 27


>csi-MIR396c_MI0016735_Citrus_sinensis_miR396c_stem-loop_178
          Length = 178

 Score = 50.3 bits (25), Expect = 1e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 15 catgcttttccacagctttcttgaacttc 43
          |||| ||||||||||||||||||||||||
Sbjct: 6  catgtttttccacagctttcttgaacttc 34


>tcc-MIR396e_MI0017515_Theobroma_cacao_miR396e_stem-loop_146
          Length = 146

 Score = 50.3 bits (25), Expect = 1e-07
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 15  catgcttttccacagctttcttgaacttc 43
           ||||||||||||| |||||||||||||||
Sbjct: 131 catgcttttccacggctttcttgaacttc 103



 Score = 46.3 bits (23), Expect = 2e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 13 gccatgcttttccacagctttcttgaacttc 43
          |||||| | ||||||||||||||||||||||
Sbjct: 12 gccatgttattccacagctttcttgaacttc 42


>aly-MIR396b_MI0014582_Arabidopsis_lyrata_miR396b_stem-loop_188
          Length = 188

 Score = 48.3 bits (24), Expect = 5e-07
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 85  gaagctcaagaaagctgtgggagaccatggcaattc 120
           |||||||||||||||||||||| | |||| ||||||
Sbjct: 132 gaagctcaagaaagctgtgggaaaacatgacaattc 167



 Score = 46.3 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 ttttccacagctttcttgaactt 42
          |||||||||||||||||||||||
Sbjct: 30 ttttccacagctttcttgaactt 52


>pta-MIR396_MI0005788_Pinus_taeda_miR396_stem-loop_119
          Length = 119

 Score = 48.3 bits (24), Expect = 5e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 cttttccacagctttcttgaactt 42
          ||||||||||||||||||||||||
Sbjct: 14 cttttccacagctttcttgaactt 37



 Score = 42.3 bits (21), Expect = 3e-05
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 14  ccatgcttttccacagctttcttgaactt 42
           ||||||||| |||||| ||||||||||||
Sbjct: 111 ccatgctttcccacagttttcttgaactt 83


>ptc-MIR396g_MI0002331_Populus_trichocarpa_miR396g_stem-loop_168
          Length = 168

 Score = 48.3 bits (24), Expect = 5e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 15 catgcttttccacagctttcttgaactt 42
          ||||||||||||| ||||||||||||||
Sbjct: 4  catgcttttccacggctttcttgaactt 31


>tcc-MIR396d_MI0017514_Theobroma_cacao_miR396d_stem-loop_182
          Length = 182

 Score = 48.3 bits (24), Expect = 5e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 15 catgcttttccacagctttcttgaactt 42
          ||||||||||||| ||||||||||||||
Sbjct: 14 catgcttttccacggctttcttgaactt 41


>ath-MIR396b_MI0001014_Arabidopsis_thaliana_miR396b_stem-loop_135
          Length = 135

 Score = 48.3 bits (24), Expect = 5e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 cttttccacagctttcttgaactt 42
          ||||||||||||||||||||||||
Sbjct: 8  cttttccacagctttcttgaactt 31



 Score = 48.3 bits (24), Expect = 5e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 83  tggaagctcaagaaagctgtggga 106
           ||||||||||||||||||||||||
Sbjct: 102 tggaagctcaagaaagctgtggga 125


>bdi-MIR396e_MI0018108_Brachypodium_distachyon_miR396e_stem-
          loop_201
          Length = 201

 Score = 46.3 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tttccacagctttcttgaacttc 43
          |||||||||||||||||||||||
Sbjct: 31 tttccacagctttcttgaacttc 53


>zma-MIR396e_MI0013225_Zea_mays_miR396e_stem-loop_166
          Length = 166

 Score = 46.3 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tttccacagctttcttgaacttc 43
          |||||||||||||||||||||||
Sbjct: 1  tttccacagctttcttgaacttc 23


>zma-MIR396f_MI0013226_Zea_mays_miR396f_stem-loop_117
          Length = 117

 Score = 46.3 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tttccacagctttcttgaacttc 43
          |||||||||||||||||||||||
Sbjct: 1  tttccacagctttcttgaacttc 23


>smo-MIR396_MI0006060_Selaginella_moellendorffii_miR396_stem-
          loop_168
          Length = 168

 Score = 44.3 bits (22), Expect = 8e-06
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 catgcttttccacagctttcttgaac 40
          ||||||||||||| ||||||||||||
Sbjct: 4  catgcttttccacggctttcttgaac 29



 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 24  ccacagctttcttgaacttc 43
           ||||||||||||||||||||
Sbjct: 153 ccacagctttcttgaacttc 134



 Score = 38.4 bits (19), Expect = 5e-04
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 85  gaagctcaagaaagctgtgggagaccatggc 115
           |||| ||||||||||||||||| || |||||
Sbjct: 134 gaagttcaagaaagctgtgggaaacaatggc 164


>ghr-MIR396a_MI0005650_Gossypium_hirsutum_miR396a_stem-loop_136
          Length = 136

 Score = 44.3 bits (22), Expect = 8e-06
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 22 ttccacagctttcttgaacttcaatt 47
          |||||||||||||||||||| |||||
Sbjct: 11 ttccacagctttcttgaactgcaatt 36


>ghr-MIR396b_MI0005651_Gossypium_hirsutum_miR396b_stem-loop_135
          Length = 135

 Score = 44.3 bits (22), Expect = 8e-06
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 22 ttccacagctttcttgaacttcaatt 47
          |||||||||||||||||||| |||||
Sbjct: 11 ttccacagctttcttgaactgcaatt 36


>csi-MIR396b_MI0016707_Citrus_sinensis_miR396b_stem-loop_134
          Length = 134

 Score = 44.3 bits (22), Expect = 8e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 ttttccacagctttcttgaact 41
          ||||||||||||||||||||||
Sbjct: 18 ttttccacagctttcttgaact 39


>tcc-MIR396a_MI0017511_Theobroma_cacao_miR396a_stem-loop_146
          Length = 146

 Score = 44.3 bits (22), Expect = 8e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 ttttccacagctttcttgaact 41
          ||||||||||||||||||||||
Sbjct: 19 ttttccacagctttcttgaact 40


>aqc-MIR396b_MI0012095_Aquilegia_caerulea_miR396b_stem-loop_89
          Length = 89

 Score = 42.3 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 ttccacagctttcttgaactt 42
          |||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactt 21


>bna-MIR396a_MI0005773_Brassica_napus_miR396a_stem-loop_117
          Length = 117

 Score = 42.3 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 ttccacagctttcttgaactt 42
          |||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactt 21



 Score = 38.4 bits (19), Expect = 5e-04
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 86  aagctcaagaaagctgtggga 106
           |||||||| ||||||||||||
Sbjct: 97  aagctcaasaaagctgtggga 117


>bgy-MIR396a_MI0016983_Bruguiera_gymnorhiza_miR396a_stem-loop_128
          Length = 128

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 15 ttccacagctttcttgaact 34


>tcc-MIR396b_MI0017512_Theobroma_cacao_miR396b_stem-loop_151
          Length = 151

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40


>ssl-MIR396_MI0019351_Salvia_sclarea_miR396_stem-loop_89
          Length = 89

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20


>csi-MIR396a_MI0016706_Citrus_sinensis_miR396a_stem-loop_153
          Length = 153

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40



 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 20  ttttccacagctttcttgaa 39
           ||||||||||||||||||||
Sbjct: 109 ttttccacagctttcttgaa 90


>sbi-MIR396a_MI0001539_Sorghum_bicolor_miR396a_stem-loop_125
          Length = 125

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40


>ptc-MIR396a_MI0002325_Populus_trichocarpa_miR396a_stem-loop_123
          Length = 123

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30


>osa-MIR396b_MI0001047_Oryza_sativa_miR396b_stem-loop_116
          Length = 116

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30


>ptc-MIR396b_MI0002326_Populus_trichocarpa_miR396b_stem-loop_132
          Length = 132

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30


>ath-MIR396a_MI0001013_Arabidopsis_thaliana_miR396a_stem-loop_151
          Length = 151

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30


>zma-MIR396g_MI0013227_Zea_mays_miR396g_stem-loop_114
          Length = 114

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 22  ttccacagctttcttgaact 41
           ||||||||||||||||||||
Sbjct: 111 ttccacagctttcttgaact 92


>ssp-MIR396_MI0018195_Saccharum_ssp._miR396_stem-loop_95
          Length = 95

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20


>aqc-MIR396a_MI0012094_Aquilegia_caerulea_miR396a_stem-loop_122
          Length = 122

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20


>mdm-MIR396b_MI0023094_168
          Length = 168

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 26 ttccacagctttcttgaact 45


>zma-MIR396a_MI0001801_Zea_mays_miR396a_stem-loop_137
          Length = 137

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40


>gma-MIR396i_MI0018680_Glycine_max_miR396i_stem-loop_135
          Length = 135

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37


>bcy-MIR396a_MI0016987_Bruguiera_cylindrica_miR396a_stem-loop_128
          Length = 128

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 15 ttccacagctttcttgaact 34


>amg-MIR396_MI0018987_Acacia_mangium_miR396_stem-loop_145
          Length = 145

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40


>bdi-MIR396c_MI0018101_Brachypodium_distachyon_miR396c_stem-
          loop_153
          Length = 153

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 33 ttccacagctttcttgaact 52


>vvi-MIR396d_MI0006571_Vitis_vinifera_miR396d_stem-loop_120
          Length = 120

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30


>sbi-MIR396b_MI0001538_Sorghum_bicolor_miR396b_stem-loop_128
          Length = 128

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40


>mtr-MIR396b_MI0005622_Medicago_truncatula_miR396b_stem-loop_95
          Length = 95

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaact 25


>zma-MIR396b_MI0001800_Zea_mays_miR396b_stem-loop_136
          Length = 136

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40


>gma-MIR396e_MI0016586_Glycine_max_miR396e_stem-loop_114
          Length = 114

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 7  ttccacagctttcttgaact 26


>sof-MIR396_MI0001755_Saccharum_officinarum_miR396_stem-loop_134
          Length = 134

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40


>aau-MIR396_MI0018981_Acacia_auriculiformis_miR396_stem-loop_146
          Length = 146

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 23 ttccacagctttcttgaact 42


>gma-MIR396a_MI0001785_Glycine_max_miR396a_stem-loop_140
          Length = 140

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40


>zma-MIR396h_MI0013228_Zea_mays_miR396h_stem-loop_124
          Length = 124

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 98 ttccacagctttcttgaact 79


>bdi-MIR396d_MI0018096_Brachypodium_distachyon_miR396d_stem-
          loop_152
          Length = 152

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 33 ttccacagctttcttgaact 52


>pab-MIR396c_MI0016124_Picea_abies_miR396c_stem-loop_143
          Length = 143

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 20 ttttccacagctttcttgaacttc 43
          |||||||| |||||||||||||||
Sbjct: 23 ttttccacggctttcttgaacttc 46


>lja-MIR396_MI0010581_Lotus_japonicus_miR396_stem-loop_108
          Length = 108

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35


>vvi-MIR396c_MI0007955_Vitis_vinifera_miR396c_stem-loop_108
          Length = 108

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30


>osa-MIR396a_MI0001046_Oryza_sativa_miR396a_stem-loop_154
          Length = 154

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30


>gma-MIR396h_MI0018679_Glycine_max_miR396h_stem-loop_148
          Length = 148

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40


>aly-MIR396a_MI0014581_Arabidopsis_lyrata_miR396a_stem-loop_172
          Length = 172

 Score = 40.3 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 24 ttccacagctttcttgaact 43


>pab-MIR396b_MI0016123_Picea_abies_miR396b_stem-loop_116
          Length = 116

 Score = 38.4 bits (19), Expect = 5e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 20 ttttccacagctttcttgaactt 42
          |||||||| ||||||||||||||
Sbjct: 7  ttttccacggctttcttgaactt 29


>mdm-MIR396a_MI0023093_149
          Length = 149

 Score = 38.4 bits (19), Expect = 5e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaac 35


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.