(149 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR171c_MI0023044_122                                             242   2e-65
mdm-MIR171e_MI0023046_142                                             153   2e-38
tae-MIR171a_MI0006175_Triticum_aestivum_miR171a_stem-loop_130          68   8e-13
bna-MIR171f_MI0006455_Brassica_napus_miR171f_stem-loop_119             68   8e-13
bra-MIR171e_MI0010660_Brassica_rapa_miR171e_stem-loop_119              68   8e-13
zma-MIR171d_MI0001792_Zea_mays_miR171d_stem-loop_121                   60   2e-10
hvu-MIR171_MI0016461_Hordeum_vulgare_miR171_stem-loop_173              60   2e-10
bdi-MIR171d_MI0018090_Brachypodium_distachyon_miR171d_stem-loop_156    60   2e-10
ath-MIR171a_MI0000214_Arabidopsis_thaliana_miR171a_stem-loop_123       60   2e-10
aly-MIR171a_MI0014560_Arabidopsis_lyrata_miR171a_stem-loop_198         60   2e-10
gma-MIR171j_MI0018641_Glycine_max_miR171j_stem-loop_153                56   3e-09
mdm-MIR171d_MI0023045_120                                              54   1e-08
osa-MIR171a_MI0000680_Oryza_sativa_miR171a_stem-loop_96                52   5e-08
ptc-MIR171f_MI0002282_Populus_trichocarpa_miR171f_stem-loop_130        52   5e-08
rco-MIR171d_MI0013401_Ricinus_communis_miR171d_stem-loop_124           52   5e-08
bna-MIR171g_MI0005771_Brassica_napus_miR171g_stem-loop_80              52   5e-08
sbi-MIR171d_MI0001565_Sorghum_bicolor_miR171d_stem-loop_153            52   5e-08
osa-MIR171e_MI0001136_Oryza_sativa_miR171e_stem-loop_119               50   2e-07
zma-MIR171n_MI0013208_Zea_mays_miR171n_stem-loop_78                    50   2e-07
sbi-MIR171g_MI0010880_Sorghum_bicolor_miR171g_stem-loop_77             48   7e-07
osa-MIR171d_MI0001135_Oryza_sativa_miR171d_stem-loop_135               46   3e-06
zma-MIR171a_MI0001491_Zea_mays_miR171a_stem-loop_99                    46   3e-06
bdi-MIR171a_MI0011559_Brachypodium_distachyon_miR171a_stem-loop_120    46   3e-06
vvi-MIR171e_MI0006540_Vitis_vinifera_miR171e_stem-loop_103             46   3e-06
rco-MIR171f_MI0013403_Ricinus_communis_miR171f_stem-loop_111           44   1e-05
ath-MIR170_MI0000213_Arabidopsis_thaliana_miR170_stem-loop_93          44   1e-05
sly-MIR171a_MI0008365_Solanum_lycopersicum_miR171a_stem-loop_122       44   1e-05
tcc-MIR171a_MI0017489_Theobroma_cacao_miR171a_stem-loop_119            44   1e-05
sbi-MIR171j_MI0010883_Sorghum_bicolor_miR171j_stem-loop_108            44   1e-05
ptc-MIR171i_MI0002285_Populus_trichocarpa_miR171i_stem-loop_129        44   1e-05
aly-MIR170_MI0014559_Arabidopsis_lyrata_miR170_stem-loop_212           44   1e-05
tcc-MIR171h_MI0017496_Theobroma_cacao_miR171h_stem-loop_135            44   1e-05
zma-MIR171e_MI0001837_Zea_mays_miR171e_stem-loop_126                   44   1e-05
sly-MIR171c_MI0008367_Solanum_lycopersicum_miR171c_stem-loop_121       42   5e-05
vvi-MIR171a_MI0006536_Vitis_vinifera_miR171a_stem-loop_99              42   5e-05
mdm-MIR171b_MI0023043_93                                               42   5e-05
rco-MIR171e_MI0013402_Ricinus_communis_miR171e_stem-loop_84            42   5e-05
ptc-MIR171g_MI0002283_Populus_trichocarpa_miR171g_stem-loop_100        42   5e-05
rco-MIR171c_MI0013400_Ricinus_communis_miR171c_stem-loop_87            42   5e-05
mdm-MIR171a_MI0023042_87                                               42   5e-05
ptc-MIR171h_MI0002284_Populus_trichocarpa_miR171h_stem-loop_100        42   5e-05
csi-MIR171a_MI0016699_Citrus_sinensis_miR171a_stem-loop_97             42   5e-05
aqc-MIR171b_MI0012085_Aquilegia_caerulea_miR171b_stem-loop_77          42   5e-05
vvi-MIR171i_MI0006543_Vitis_vinifera_miR171i_stem-loop_103             42   5e-05
ccl-MIR171_MI0013301_Citrus_clementine_miR171_stem-loop_321            42   5e-05
mdm-MIR171k_MI0023052_99                                               40   2e-04
mtr-MIR171g_MI0005635_Medicago_truncatula_miR171g_stem-loop_105        40   2e-04
rco-MIR171g_MI0013404_Ricinus_communis_miR171g_stem-loop_89            40   2e-04
ptc-MIR171k_MI0005114_Populus_trichocarpa_miR171k_stem-loop_78         40   2e-04
bdi-MIR171b_MI0018084_Brachypodium_distachyon_miR171b_stem-loop_164    40   2e-04
mtr-MIR171e_MI0005620_Medicago_truncatula_miR171e_stem-loop_93         40   2e-04
mtr-MIR171d_MI0005619_Medicago_truncatula_miR171d_stem-loop_105        40   2e-04
tcc-MIR171c_MI0017491_Theobroma_cacao_miR171c_stem-loop_123            40   2e-04
tcc-MIR171b_MI0017490_Theobroma_cacao_miR171b_stem-loop_120            40   2e-04
gma-MIR171k_MI0018667_Glycine_max_miR171k_stem-loop_98                 40   2e-04
ptc-MIR171c_MI0002279_Populus_trichocarpa_miR171c_stem-loop_104        40   2e-04
sly-MIR171d_MI0008368_Solanum_lycopersicum_miR171d_stem-loop_112       40   2e-04
mdm-MIR171j_MI0023051_89                                               40   2e-04
vvi-MIR171f_MI0006541_Vitis_vinifera_miR171f_stem-loop_103             40   2e-04
ppt-MIR171b_MI0005689_Physcomitrella_patens_miR171b_stem-loop_92       40   2e-04
gma-MIR171l_MI0018687_Glycine_max_miR171l_stem-loop_98                 40   2e-04
mdm-MIR171l_MI0023053_99                                               40   2e-04
ptc-MIR171e_MI0002281_Populus_trichocarpa_miR171e_stem-loop_94         40   2e-04
far-MIR171_MI0016605_Festuca_arundinacea_miR171_stem-loop_130          40   2e-04
ppt-MIR171a_MI0005688_Physcomitrella_patens_miR171a_stem-loop_91       40   2e-04
sbi-MIR171i_MI0010882_Sorghum_bicolor_miR171i_stem-loop_90             40   2e-04
ssl-MIR171b_MI0019347_Salvia_sclarea_miR171b_stem-loop_88              40   2e-04
gma-MIR171g_MI0017841_Glycine_max_miR171g_stem-loop_90                 40   2e-04
ptc-MIR171d_MI0002280_Populus_trichocarpa_miR171d_stem-loop_100        40   2e-04
zma-MIR171j_MI0001836_Zea_mays_miR171j_stem-loop_129                   38   7e-04
vvi-MIR171b_MI0006537_Vitis_vinifera_miR171b_stem-loop_99              38   7e-04
sbi-MIR171k_MI0010884_Sorghum_bicolor_miR171k_stem-loop_87             38   7e-04
smo-MIR171d_MI0006059_Selaginella_moellendorffii_miR171d_stem-lo...    38   7e-04
zma-MIR171b_MI0001492_Zea_mays_miR171b_stem-loop_85                    38   7e-04
sbi-MIR171b_MI0001564_Sorghum_bicolor_miR171b_stem-loop_132            38   7e-04
tcc-MIR171e_MI0017493_Theobroma_cacao_miR171e_stem-loop_161            38   7e-04
osa-MIR171f_MI0001137_Oryza_sativa_miR171f_stem-loop_127               38   7e-04
tcc-MIR171g_MI0017495_Theobroma_cacao_miR171g_stem-loop_115            38   7e-04

>mdm-MIR171c_MI0023044_122
          Length = 122

 Score =  242 bits (122), Expect = 2e-65
 Identities = 122/122 (100%)
 Strand = Plus / Plus

                                                                       
Query: 15  tactgtgatgttggcccggttcactcagagaagaagactacttactgcatttgcatgtac 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tactgtgatgttggcccggttcactcagagaagaagactacttactgcatttgcatgtac 60

                                                                       
Query: 75  gtagatacgtacgttgttctatggtcacctgaatctgattgagccgcgccaatatctcag 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtagatacgtacgttgttctatggtcacctgaatctgattgagccgcgccaatatctcag 120

             
Query: 135 tg 136
           ||
Sbjct: 121 tg 122


>mdm-MIR171e_MI0023046_142
          Length = 142

 Score =  153 bits (77), Expect = 2e-38
 Identities = 129/143 (90%), Gaps = 5/143 (3%)
 Strand = Plus / Plus

                                                                       
Query: 6   tgaaatcgttactgtgatgttggcccggtt-cactcagagaagaagactacttactgc-- 62
           |||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||||  
Sbjct: 1   tgaaatagttactgtgatgttggcccggtttcactcagagaggaagactgcttactgctg 60

                                                                       
Query: 63  -atttgcatgtacgtagatacgtacgttgttctatggtcacctgaatctgattgagccgc 121
            || |||||||||||||  |||||||||||  | ||||| ||||||||||||||||||||
Sbjct: 61  catctgcatgtacgtaggaacgtacgttgtggt-tggtctcctgaatctgattgagccgc 119

                                  
Query: 122 gccaatatctcagtgctctttca 144
           |||||||||||||||||||||||
Sbjct: 120 gccaatatctcagtgctctttca 142


>tae-MIR171a_MI0006175_Triticum_aestivum_miR171a_stem-loop_130
          Length = 130

 Score = 67.9 bits (34), Expect = 8e-13
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 108 tctgattgagccgcgccaatatctcagtgctctttcat 145
           ||||||||||||| ||||||||||||||||||||||||
Sbjct: 87  tctgattgagccgtgccaatatctcagtgctctttcat 124


>bna-MIR171f_MI0006455_Brassica_napus_miR171f_stem-loop_119
          Length = 119

 Score = 67.9 bits (34), Expect = 8e-13
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 107 atctgattgagccgcgccaatatctcagtgctct 140
           ||||||||||||||||||||||||||||||||||
Sbjct: 81  atctgattgagccgcgccaatatctcagtgctct 114


>bra-MIR171e_MI0010660_Brassica_rapa_miR171e_stem-loop_119
          Length = 119

 Score = 67.9 bits (34), Expect = 8e-13
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 107 atctgattgagccgcgccaatatctcagtgctct 140
           ||||||||||||||||||||||||||||||||||
Sbjct: 81  atctgattgagccgcgccaatatctcagtgctct 114


>zma-MIR171d_MI0001792_Zea_mays_miR171d_stem-loop_121
          Length = 121

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 108 tctgattgagccgcgccaatatctcagtgctctttcat 145
           ||||||||||||| |||||||||||||| |||||||||
Sbjct: 80  tctgattgagccgtgccaatatctcagtactctttcat 117


>hvu-MIR171_MI0016461_Hordeum_vulgare_miR171_stem-loop_173
          Length = 173

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 108 tctgattgagccgcgccaatatctcagtgctctttcat 145
           ||||||||||||| |||||||||| |||||||||||||
Sbjct: 110 tctgattgagccgtgccaatatcttagtgctctttcat 147


>bdi-MIR171d_MI0018090_Brachypodium_distachyon_miR171d_stem-loop_156
          Length = 156

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 108 tctgattgagccgcgccaatatctcagtgctctttcat 145
           ||||||||||||| |||||||||| |||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatcttagtgctctttcat 140


>ath-MIR171a_MI0000214_Arabidopsis_thaliana_miR171a_stem-loop_123
          Length = 123

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 107 atctgattgagccgcgccaatatctcagtgctct 140
           ||||||||||||||||||||||||||||| ||||
Sbjct: 85  atctgattgagccgcgccaatatctcagtactct 118


>aly-MIR171a_MI0014560_Arabidopsis_lyrata_miR171a_stem-loop_198
          Length = 198

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 107 atctgattgagccgcgccaatatctcagtgctct 140
           ||||||||||||||||||||||||||||| ||||
Sbjct: 127 atctgattgagccgcgccaatatctcagtactct 160


>gma-MIR171j_MI0018641_Glycine_max_miR171j_stem-loop_153
          Length = 153

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 110 tgattgagccgcgccaatatctcagtgctctttcat 145
           ||||||||||| ||||||||||||||||| ||||||
Sbjct: 118 tgattgagccgtgccaatatctcagtgctatttcat 153



 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                         
Query: 13 gttactgtgatgttggcccggttcactcaga 43
          |||| |||||| |||||| ||||||||||||
Sbjct: 9  gttattgtgatattggcctggttcactcaga 39


>mdm-MIR171d_MI0023045_120
          Length = 120

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 104 tgaatctgattgagccgcgccaatatc 130
           |||||||||||||||||||||||||||
Sbjct: 94  tgaatctgattgagccgcgccaatatc 120



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 34 ttcactcagagaagaagactacttactgc 62
          |||||||||||||||||||| ||||||||
Sbjct: 15 ttcactcagagaagaagactgcttactgc 43


>osa-MIR171a_MI0000680_Oryza_sativa_miR171a_stem-loop_96
          Length = 96

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 107 atctgattgagccgcgccaatatctc 132
           ||||||||||||||||||||||||||
Sbjct: 64  atctgattgagccgcgccaatatctc 89


>ptc-MIR171f_MI0002282_Populus_trichocarpa_miR171f_stem-loop_130
          Length = 130

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 21 gatgttggcccggttcactcagagaa 46
          ||||||||||||||||||||||||||
Sbjct: 11 gatgttggcccggttcactcagagaa 36



 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 108 tctgattgagccgcgccaatatctcagtgctc 139
           ||||||||||||| |||||||||| |||||||
Sbjct: 99  tctgattgagccgtgccaatatcttagtgctc 130


>rco-MIR171d_MI0013401_Ricinus_communis_miR171d_stem-loop_124
          Length = 124

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 18 tgtgatgttggcccggttcactcaga 43
          ||||||||||||||||||||||||||
Sbjct: 1  tgtgatgttggcccggttcactcaga 26


>bna-MIR171g_MI0005771_Brassica_napus_miR171g_stem-loop_80
          Length = 80

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 107 atctgattgagccgcgccaatatctc 132
           ||||||||||||||||||||||||||
Sbjct: 55  atctgattgagccgcgccaatatctc 80


>sbi-MIR171d_MI0001565_Sorghum_bicolor_miR171d_stem-loop_153
          Length = 153

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 108 tctgattgagccgcgccaatatctcagtgctctt 141
           ||||||||||||| |||||||||||||| |||||
Sbjct: 112 tctgattgagccgtgccaatatctcagtactctt 145


>osa-MIR171e_MI0001136_Oryza_sativa_miR171e_stem-loop_119
          Length = 119

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 108 tctgattgagccgcgccaatatctcagtgctct 140
           ||||||||||||| |||||||||| ||||||||
Sbjct: 87  tctgattgagccgtgccaatatcttagtgctct 119


>zma-MIR171n_MI0013208_Zea_mays_miR171n_stem-loop_78
          Length = 78

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 107 atctgattgagccgcgccaatatct 131
           |||||||||||||||||||||||||
Sbjct: 54  atctgattgagccgcgccaatatct 78


>sbi-MIR171g_MI0010880_Sorghum_bicolor_miR171g_stem-loop_77
          Length = 77

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 107 atctgattgagccgcgccaatatc 130
           ||||||||||||||||||||||||
Sbjct: 54  atctgattgagccgcgccaatatc 77


>osa-MIR171d_MI0001135_Oryza_sativa_miR171d_stem-loop_135
          Length = 135

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 108 tctgattgagccgcgccaatatctcag 134
           ||||||||||||| |||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatctcag 129



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 20 tgatgttggcccggttcactcaga 43
          |||||||||||||| |||||||||
Sbjct: 10 tgatgttggcccggctcactcaga 33


>zma-MIR171a_MI0001491_Zea_mays_miR171a_stem-loop_99
          Length = 99

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 108 tctgattgagccgcgccaatatc 130
           |||||||||||||||||||||||
Sbjct: 77  tctgattgagccgcgccaatatc 99


>bdi-MIR171a_MI0011559_Brachypodium_distachyon_miR171a_stem-loop_120
          Length = 120

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 110 tgattgagccgcgccaatatctc 132
           |||||||||||||||||||||||
Sbjct: 50  tgattgagccgcgccaatatctc 72


>vvi-MIR171e_MI0006540_Vitis_vinifera_miR171e_stem-loop_103
          Length = 103

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 108 tctgattgagccgcgccaatatc 130
           |||||||||||||||||||||||
Sbjct: 68  tctgattgagccgcgccaatatc 90


>rco-MIR171f_MI0013403_Ricinus_communis_miR171f_stem-loop_111
          Length = 111

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 110 tgattgagccgcgccaatatctcagt 135
           ||||||||||| ||||||||||||||
Sbjct: 86  tgattgagccgtgccaatatctcagt 111


>ath-MIR170_MI0000213_Arabidopsis_thaliana_miR170_stem-loop_93
          Length = 93

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 107 atctgattgagccgcgccaatatctcagtgctct 140
           |||||||||||||| | |||||||||||| ||||
Sbjct: 56  atctgattgagccgtgtcaatatctcagtcctct 89


>sly-MIR171a_MI0008365_Solanum_lycopersicum_miR171a_stem-loop_122
          Length = 122

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 110 tgattgagccgcgccaatatctcagt 135
           ||||||||||| ||||||||||||||
Sbjct: 87  tgattgagccgtgccaatatctcagt 112


>tcc-MIR171a_MI0017489_Theobroma_cacao_miR171a_stem-loop_119
          Length = 119

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 110 tgattgagccgcgccaatatct 131
           ||||||||||||||||||||||
Sbjct: 79  tgattgagccgcgccaatatct 100


>sbi-MIR171j_MI0010883_Sorghum_bicolor_miR171j_stem-loop_108
          Length = 108

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 109 ctgattgagccgcgccaatatc 130
           ||||||||||||||||||||||
Sbjct: 82  ctgattgagccgcgccaatatc 103


>ptc-MIR171i_MI0002285_Populus_trichocarpa_miR171i_stem-loop_129
          Length = 129

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 110 tgattgagccgcgccaatatctcagt 135
           ||||||||||| ||||||||||||||
Sbjct: 100 tgattgagccgtgccaatatctcagt 125


>aly-MIR170_MI0014559_Arabidopsis_lyrata_miR170_stem-loop_212
          Length = 212

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 107 atctgattgagccgcgccaatatctcagtgctct 140
           |||||||||||||| | |||||||||||| ||||
Sbjct: 114 atctgattgagccgtgtcaatatctcagtcctct 147


>tcc-MIR171h_MI0017496_Theobroma_cacao_miR171h_stem-loop_135
          Length = 135

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                
Query: 6  tgaaatcgttactgtgatgttggcccggttcactcaga 43
          |||||| || |||||||| |||||| ||||||||||||
Sbjct: 6  tgaaatagtaactgtgatattggcctggttcactcaga 43



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 108 tctgattgagccgcgccaatatctcagtgctctttcat 145
           ||||||||||||| |||||||||| ||  |||||||||
Sbjct: 93  tctgattgagccgtgccaatatcttagaactctttcat 130


>zma-MIR171e_MI0001837_Zea_mays_miR171e_stem-loop_126
          Length = 126

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 108 tctgattgagccgcgccaatatctcagtgctctt 141
           ||||||||||||| |||||||||| ||| |||||
Sbjct: 85  tctgattgagccgtgccaatatcttagtactctt 118


>sly-MIR171c_MI0008367_Solanum_lycopersicum_miR171c_stem-loop_121
          Length = 121

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 110 tgattgagccgcgccaatatc 130
           |||||||||||||||||||||
Sbjct: 78  tgattgagccgcgccaatatc 98


>vvi-MIR171a_MI0006536_Vitis_vinifera_miR171a_stem-loop_99
          Length = 99

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 106 aatctgattgagccgcgccaatatc 130
           ||||||||||||||| |||||||||
Sbjct: 64  aatctgattgagccgtgccaatatc 88


>mdm-MIR171b_MI0023043_93
          Length = 93

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 108 tctgattgagccgcgccaatatctc 132
           ||||||||||||||| |||||||||
Sbjct: 64  tctgattgagccgcgtcaatatctc 88


>rco-MIR171e_MI0013402_Ricinus_communis_miR171e_stem-loop_84
          Length = 84

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 106 aatctgattgagccgcgccaatatc 130
           ||||||||||||||| |||||||||
Sbjct: 55  aatctgattgagccgtgccaatatc 79


>ptc-MIR171g_MI0002283_Populus_trichocarpa_miR171g_stem-loop_100
          Length = 100

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 106 aatctgattgagccgcgccaatatc 130
           ||||||||||||||| |||||||||
Sbjct: 67  aatctgattgagccgtgccaatatc 91


>rco-MIR171c_MI0013400_Ricinus_communis_miR171c_stem-loop_87
          Length = 87

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 106 aatctgattgagccgcgccaatatc 130
           ||||||||||||||| |||||||||
Sbjct: 58  aatctgattgagccgtgccaatatc 82


>mdm-MIR171a_MI0023042_87
          Length = 87

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 108 tctgattgagccgcgccaatatctc 132
           ||||||||||||||| |||||||||
Sbjct: 62  tctgattgagccgcgtcaatatctc 86


>ptc-MIR171h_MI0002284_Populus_trichocarpa_miR171h_stem-loop_100
          Length = 100

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 106 aatctgattgagccgcgccaatatc 130
           ||||||||||||||| |||||||||
Sbjct: 67  aatctgattgagccgtgccaatatc 91


>csi-MIR171a_MI0016699_Citrus_sinensis_miR171a_stem-loop_97
          Length = 97

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 110 tgattgagccgcgccaatatc 130
           |||||||||||||||||||||
Sbjct: 67  tgattgagccgcgccaatatc 87


>aqc-MIR171b_MI0012085_Aquilegia_caerulea_miR171b_stem-loop_77
          Length = 77

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 106 aatctgattgagccgcgccaatatc 130
           ||||||||||||||| |||||||||
Sbjct: 51  aatctgattgagccgtgccaatatc 75


>vvi-MIR171i_MI0006543_Vitis_vinifera_miR171i_stem-loop_103
          Length = 103

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 106 aatctgattgagccgcgccaatatc 130
           ||||||||||||||| |||||||||
Sbjct: 65  aatctgattgagccgtgccaatatc 89


>ccl-MIR171_MI0013301_Citrus_clementine_miR171_stem-loop_321
          Length = 321

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 110 tgattgagccgcgccaatatc 130
           |||||||||||||||||||||
Sbjct: 122 tgattgagccgcgccaatatc 142


>mdm-MIR171k_MI0023052_99
          Length = 99

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 72  gattgagccgcgccaatatc 91


>mtr-MIR171g_MI0005635_Medicago_truncatula_miR171g_stem-loop_105
          Length = 105

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 110 tgattgagccgcgccaatatctca 133
           ||||||||||| ||||||||||||
Sbjct: 80  tgattgagccgtgccaatatctca 103


>rco-MIR171g_MI0013404_Ricinus_communis_miR171g_stem-loop_89
          Length = 89

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 65  gattgagccgcgccaatatc 84


>ptc-MIR171k_MI0005114_Populus_trichocarpa_miR171k_stem-loop_78
          Length = 78

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 59  gattgagccgcgccaatatc 78


>bdi-MIR171b_MI0018084_Brachypodium_distachyon_miR171b_stem-loop_164
          Length = 164

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 107 atctgattgagccgcgccaatatc 130
           |||||||||||||| |||||||||
Sbjct: 111 atctgattgagccgtgccaatatc 134


>mtr-MIR171e_MI0005620_Medicago_truncatula_miR171e_stem-loop_93
          Length = 93

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 69  gattgagccgcgccaatatc 88


>mtr-MIR171d_MI0005619_Medicago_truncatula_miR171d_stem-loop_105
          Length = 105

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 110 tgattgagccgcgccaatatctca 133
           ||||||||||| ||||||||||||
Sbjct: 80  tgattgagccgtgccaatatctca 103


>tcc-MIR171c_MI0017491_Theobroma_cacao_miR171c_stem-loop_123
          Length = 123

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 84  gattgagccgcgccaatatc 103


>tcc-MIR171b_MI0017490_Theobroma_cacao_miR171b_stem-loop_120
          Length = 120

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 81  gattgagccgcgccaatatc 100


>gma-MIR171k_MI0018667_Glycine_max_miR171k_stem-loop_98
          Length = 98

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 71  gattgagccgcgccaatatc 90


>ptc-MIR171c_MI0002279_Populus_trichocarpa_miR171c_stem-loop_104
          Length = 104

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 76  gattgagccgcgccaatatc 95


>sly-MIR171d_MI0008368_Solanum_lycopersicum_miR171d_stem-loop_112
          Length = 112

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 73  gattgagccgcgccaatatc 92


>mdm-MIR171j_MI0023051_89
          Length = 89

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 67  gattgagccgcgccaatatc 86


>vvi-MIR171f_MI0006541_Vitis_vinifera_miR171f_stem-loop_103
          Length = 103

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 71  gattgagccgcgccaatatc 90


>ppt-MIR171b_MI0005689_Physcomitrella_patens_miR171b_stem-loop_92
          Length = 92

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 65  gattgagccgcgccaatatc 84


>gma-MIR171l_MI0018687_Glycine_max_miR171l_stem-loop_98
          Length = 98

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 71  gattgagccgcgccaatatc 90


>mdm-MIR171l_MI0023053_99
          Length = 99

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 72  gattgagccgcgccaatatc 91


>ptc-MIR171e_MI0002281_Populus_trichocarpa_miR171e_stem-loop_94
          Length = 94

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 107 atctgattgagccgcgccaatatc 130
           |||||||||||||| |||||||||
Sbjct: 62  atctgattgagccgtgccaatatc 85


>far-MIR171_MI0016605_Festuca_arundinacea_miR171_stem-loop_130
          Length = 130

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 107 atctgattgagccgcgccaatatc 130
           |||||||||||||| |||||||||
Sbjct: 87  atctgattgagccgtgccaatatc 110


>ppt-MIR171a_MI0005688_Physcomitrella_patens_miR171a_stem-loop_91
          Length = 91

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 64  gattgagccgcgccaatatc 83


>sbi-MIR171i_MI0010882_Sorghum_bicolor_miR171i_stem-loop_90
          Length = 90

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 108 tctgattgagccgcgccaatatct 131
           ||||||||||||| ||||||||||
Sbjct: 66  tctgattgagccgtgccaatatct 89


>ssl-MIR171b_MI0019347_Salvia_sclarea_miR171b_stem-loop_88
          Length = 88

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 66  gattgagccgcgccaatatc 85


>gma-MIR171g_MI0017841_Glycine_max_miR171g_stem-loop_90
          Length = 90

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 107 atctgattgagccgcgccaatatc 130
           |||||||||||||| |||||||||
Sbjct: 58  atctgattgagccgtgccaatatc 81


>ptc-MIR171d_MI0002280_Populus_trichocarpa_miR171d_stem-loop_100
          Length = 100

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gattgagccgcgccaatatc 130
           ||||||||||||||||||||
Sbjct: 72  gattgagccgcgccaatatc 91


>zma-MIR171j_MI0001836_Zea_mays_miR171j_stem-loop_129
          Length = 129

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 108 tctgattgagccgcgccaatatc 130
           ||||||||||||| |||||||||
Sbjct: 88  tctgattgagccgtgccaatatc 110


>vvi-MIR171b_MI0006537_Vitis_vinifera_miR171b_stem-loop_99
          Length = 99

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 tgattgagccgcgccaatatctc 132
           ||||||||||||| |||||||||
Sbjct: 69  tgattgagccgcgtcaatatctc 91


>sbi-MIR171k_MI0010884_Sorghum_bicolor_miR171k_stem-loop_87
          Length = 87

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 108 tctgattgagccgcgccaatatc 130
           ||||||||| |||||||||||||
Sbjct: 26  tctgattgaaccgcgccaatatc 4


>smo-MIR171d_MI0006059_Selaginella_moellendorffii_miR171d_stem-
           loop_103
          Length = 103

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 112 attgagccgcgccaatatc 130
           |||||||||||||||||||
Sbjct: 71  attgagccgcgccaatatc 89


>zma-MIR171b_MI0001492_Zea_mays_miR171b_stem-loop_85
          Length = 85

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 108 tctgattgagccgcgccaatatc 130
           ||||||||| |||||||||||||
Sbjct: 26  tctgattgaaccgcgccaatatc 4


>sbi-MIR171b_MI0001564_Sorghum_bicolor_miR171b_stem-loop_132
          Length = 132

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 108 tctgattgagccgcgccaatatc 130
           ||||||||||||| |||||||||
Sbjct: 91  tctgattgagccgtgccaatatc 113


>tcc-MIR171e_MI0017493_Theobroma_cacao_miR171e_stem-loop_161
          Length = 161

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 21 gatgttggcccggttcactcaga 43
          ||||||||| |||||||||||||
Sbjct: 21 gatgttggctcggttcactcaga 43


>osa-MIR171f_MI0001137_Oryza_sativa_miR171f_stem-loop_127
          Length = 127

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 108 tctgattgagccgcgccaatatc 130
           ||||||||||||| |||||||||
Sbjct: 95  tctgattgagccgtgccaatatc 117


>tcc-MIR171g_MI0017495_Theobroma_cacao_miR171g_stem-loop_115
          Length = 115

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 108 tctgattgagccgcgccaatatc 130
           ||||||||||||| |||||||||
Sbjct: 73  tctgattgagccgtgccaatatc 95


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.