(158 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR396a_MI0023093_149                                             295   2e-81
mdm-MIR396b_MI0023094_168                                             274   7e-75
gma-MIR396a_MI0001785_Glycine_max_miR396a_stem-loop_140                80   2e-16
gma-MIR396i_MI0018680_Glycine_max_miR396i_stem-loop_135                78   9e-16
amg-MIR396_MI0018987_Acacia_mangium_miR396_stem-loop_145               76   4e-15
aau-MIR396_MI0018981_Acacia_auriculiformis_miR396_stem-loop_146        72   5e-14
csi-MIR396b_MI0016707_Citrus_sinensis_miR396b_stem-loop_134            70   2e-13
bgy-MIR396a_MI0016983_Bruguiera_gymnorhiza_miR396a_stem-loop_128       68   9e-13
ath-MIR396a_MI0001013_Arabidopsis_thaliana_miR396a_stem-loop_151       68   9e-13
bcy-MIR396a_MI0016987_Bruguiera_cylindrica_miR396a_stem-loop_128       68   9e-13
lja-MIR396_MI0010581_Lotus_japonicus_miR396_stem-loop_108              68   9e-13
tcc-MIR396b_MI0017512_Theobroma_cacao_miR396b_stem-loop_151            64   1e-11
ptc-MIR396a_MI0002325_Populus_trichocarpa_miR396a_stem-loop_123        62   5e-11
ghr-MIR396a_MI0005650_Gossypium_hirsutum_miR396a_stem-loop_136         62   5e-11
ghr-MIR396b_MI0005651_Gossypium_hirsutum_miR396b_stem-loop_135         62   5e-11
aly-MIR396a_MI0014581_Arabidopsis_lyrata_miR396a_stem-loop_172         62   5e-11
ptc-MIR396b_MI0002326_Populus_trichocarpa_miR396b_stem-loop_132        60   2e-10
vvi-MIR396d_MI0006571_Vitis_vinifera_miR396d_stem-loop_120             60   2e-10
mtr-MIR396b_MI0005622_Medicago_truncatula_miR396b_stem-loop_95         60   2e-10
aqc-MIR396a_MI0012094_Aquilegia_caerulea_miR396a_stem-loop_122         52   5e-08
csi-MIR396a_MI0016706_Citrus_sinensis_miR396a_stem-loop_153            50   2e-07
sbi-MIR396b_MI0001538_Sorghum_bicolor_miR396b_stem-loop_128            48   8e-07
zma-MIR396b_MI0001800_Zea_mays_miR396b_stem-loop_136                   48   8e-07
sof-MIR396_MI0001755_Saccharum_officinarum_miR396_stem-loop_134        48   8e-07
zma-MIR396h_MI0013228_Zea_mays_miR396h_stem-loop_124                   48   8e-07
ssl-MIR396_MI0019351_Salvia_sclarea_miR396_stem-loop_89                46   3e-06
osa-MIR396b_MI0001047_Oryza_sativa_miR396b_stem-loop_116               46   3e-06
zma-MIR396g_MI0013227_Zea_mays_miR396g_stem-loop_114                   46   3e-06
bdi-MIR396d_MI0018096_Brachypodium_distachyon_miR396d_stem-loop_152    46   3e-06
sbi-MIR396a_MI0001539_Sorghum_bicolor_miR396a_stem-loop_125            44   1e-05
zma-MIR396a_MI0001801_Zea_mays_miR396a_stem-loop_137                   44   1e-05
ssp-MIR396_MI0018195_Saccharum_ssp._miR396_stem-loop_95                42   5e-05
pab-MIR396a_MI0016122_Picea_abies_miR396a_stem-loop_100                42   5e-05
bdi-MIR396c_MI0018101_Brachypodium_distachyon_miR396c_stem-loop_153    42   5e-05
gma-MIR396e_MI0016586_Glycine_max_miR396e_stem-loop_114                42   5e-05
vvi-MIR396c_MI0007955_Vitis_vinifera_miR396c_stem-loop_108             42   5e-05
osa-MIR396a_MI0001046_Oryza_sativa_miR396a_stem-loop_154               42   5e-05
gma-MIR396h_MI0018679_Glycine_max_miR396h_stem-loop_148                42   5e-05
aly-MIR396b_MI0014582_Arabidopsis_lyrata_miR396b_stem-loop_188         40   2e-04
bcy-MIR396b_MI0016988_Bruguiera_cylindrica_miR396b_stem-loop_99        38   8e-04
csi-MIR396c_MI0016735_Citrus_sinensis_miR396c_stem-loop_178            38   8e-04
ccl-MIR396_MI0013304_Citrus_clementine_miR396_stem-loop_277            38   8e-04
tcc-MIR396e_MI0017515_Theobroma_cacao_miR396e_stem-loop_146            38   8e-04
rco-MIR396_MI0013418_Ricinus_communis_miR396_stem-loop_124             38   8e-04
bdi-MIR396e_MI0018108_Brachypodium_distachyon_miR396e_stem-loop_201    38   8e-04
pta-MIR396_MI0005788_Pinus_taeda_miR396_stem-loop_119                  38   8e-04
zma-MIR396e_MI0013225_Zea_mays_miR396e_stem-loop_166                   38   8e-04
mdm-MIR396c_MI0023095_107                                              38   8e-04
aqc-MIR396b_MI0012095_Aquilegia_caerulea_miR396b_stem-loop_89          38   8e-04
osa-MIR396c_MI0001048_Oryza_sativa_miR396c_stem-loop_141               38   8e-04
mdm-MIR396d_MI0023096_103                                              38   8e-04
bgy-MIR396b_MI0016984_Bruguiera_gymnorhiza_miR396b_stem-loop_99        38   8e-04
ptc-MIR396e_MI0002329_Populus_trichocarpa_miR396e_stem-loop_145        38   8e-04
gma-MIR396g_MI0017921_Glycine_max_miR396g_stem-loop_151                38   8e-04
bna-MIR396a_MI0005773_Brassica_napus_miR396a_stem-loop_117             38   8e-04
gma-MIR396d_MI0016503_Glycine_max_miR396d_stem-loop_108                38   8e-04
sbi-MIR396c_MI0001540_Sorghum_bicolor_miR396c_stem-loop_162            38   8e-04
ptc-MIR396d_MI0002328_Populus_trichocarpa_miR396d_stem-loop_154        38   8e-04
ptc-MIR396c_MI0002327_Populus_trichocarpa_miR396c_stem-loop_102        38   8e-04
mtr-MIR396a_MI0005621_Medicago_truncatula_miR396a_stem-loop_93         38   8e-04
vvi-MIR396a_MI0006569_Vitis_vinifera_miR396a_stem-loop_116             38   8e-04
gma-MIR396f_MI0017919_Glycine_max_miR396f_stem-loop_151                38   8e-04
gma-MIR396c_MI0010572_Glycine_max_miR396c_stem-loop_117                38   8e-04
mdm-MIR396e_MI0023097_107                                              38   8e-04
tcc-MIR396c_MI0017513_Theobroma_cacao_miR396c_stem-loop_152            38   8e-04
gma-MIR396b_MI0001786_Glycine_max_miR396b_stem-loop_126                38   8e-04
vvi-MIR396b_MI0006570_Vitis_vinifera_miR396b_stem-loop_108             38   8e-04
ath-MIR396b_MI0001014_Arabidopsis_thaliana_miR396b_stem-loop_135       38   8e-04
zma-MIR396f_MI0013226_Zea_mays_miR396f_stem-loop_117                   38   8e-04
tcc-MIR396a_MI0017511_Theobroma_cacao_miR396a_stem-loop_146            38   8e-04

>mdm-MIR396a_MI0023093_149
          Length = 149

 Score =  295 bits (149), Expect = 2e-81
 Identities = 149/149 (100%)
 Strand = Plus / Plus

                                                                       
Query: 6   gatcctctttgtattcttccacagctttcttgaacagcatccatgtatgacgagatcgac 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatcctctttgtattcttccacagctttcttgaacagcatccatgtatgacgagatcgac 60

                                                                       
Query: 66  cgatctttggagtgagtcgactcagtctctctattcctcttaacttggtttgcggttcaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgatctttggagtgagtcgactcagtctctctattcctcttaacttggtttgcggttcaa 120

                                        
Query: 126 taaagctgtgggaagatacagataggctc 154
           |||||||||||||||||||||||||||||
Sbjct: 121 taaagctgtgggaagatacagataggctc 149


>mdm-MIR396b_MI0023094_168
          Length = 168

 Score =  274 bits (138), Expect = 7e-75
 Identities = 153/158 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatgatcctctttgtattcttccacagctttcttgaacagcatccatgtatgacgaga 60
           |||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||
Sbjct: 5   atgatgatcctctttgtattcttccacagctttcttgaactgcatccatctatggcgaga 64

                                                                       
Query: 61  tcgaccgatctttggagtgagtcgactcagtctctctattcctcttaacttggtttgcgg 120
           ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 65  tcgaccgatctttggagtgagtcgactcagtatctctattccccttaacttggtttgcgg 124

                                                 
Query: 121 ttcaataaagctgtgggaagatacagataggctcaata 158
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ttcaataaagctgtgggaagatacagataggctcaata 162


>gma-MIR396a_MI0001785_Glycine_max_miR396a_stem-loop_140
          Length = 140

 Score = 79.8 bits (40), Expect = 2e-16
 Identities = 46/48 (95%)
 Strand = Plus / Plus

                                                           
Query: 109 cttggtttgcggttcaataaagctgtgggaagatacagataggctcaa 156
           |||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 92  cttgttttgcggttcaataaagctgtgggaagatacagatagggtcaa 139



 Score = 69.9 bits (35), Expect = 2e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                 
Query: 10 ctctttgtattcttccacagctttcttgaacagcatcca 48
          ||||||||||||||||||||||||||||||| |||||||
Sbjct: 9  ctctttgtattcttccacagctttcttgaactgcatcca 47


>gma-MIR396i_MI0018680_Glycine_max_miR396i_stem-loop_135
          Length = 135

 Score = 77.8 bits (39), Expect = 9e-16
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                      
Query: 109 cttggtttgcggttcaataaagctgtgggaagatacagatagg 151
           |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 89  cttgttttgcggttcaataaagctgtgggaagatacagatagg 131



 Score = 73.8 bits (37), Expect = 1e-14
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                   
Query: 9  cctctttgtattcttccacagctttcttgaacagcatccat 49
          |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5  cctctttgtattcttccacagctttcttgaactgcatccat 45


>amg-MIR396_MI0018987_Acacia_mangium_miR396_stem-loop_145
          Length = 145

 Score = 75.8 bits (38), Expect = 4e-15
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                     
Query: 115 ttgcggttcaataaagctgtgggaagatacagataggctcaa 156
           ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 100 ttgcggttcaataaagctgtgggaagatacagatagggtcaa 141



 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 10 ctctttgtattcttccacagctttcttgaacagcatc 46
          |||| |||||||||||||||||||||||||| |||||
Sbjct: 9  ctctctgtattcttccacagctttcttgaactgcatc 45


>aau-MIR396_MI0018981_Acacia_auriculiformis_miR396_stem-loop_146
          Length = 146

 Score = 71.9 bits (36), Expect = 5e-14
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                   
Query: 117 gcggttcaataaagctgtgggaagatacagataggctcaa 156
           ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 104 gcggttcaataaagctgtgggaagatacagatagggtcaa 143



 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 10 ctctttgtattcttccacagctttcttgaacagcatc 46
          |||| |||||||||||||||||||||||||| |||||
Sbjct: 11 ctctctgtattcttccacagctttcttgaactgcatc 47


>csi-MIR396b_MI0016707_Citrus_sinensis_miR396b_stem-loop_134
          Length = 134

 Score = 69.9 bits (35), Expect = 2e-13
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                     
Query: 4  atgatcctctttgtattcttccacagctttcttgaacagcatc 46
          ||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 2  atgatcctctttgtatttttccacagctttcttgaactgcatc 44



 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 115 ttgcggttcaataaagctgtgggaagatacagataggctcaata 158
           ||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct: 82  ttgcggttcaataaagctgtgggaagatacaaacaggttcaata 125


>bgy-MIR396a_MI0016983_Bruguiera_gymnorhiza_miR396a_stem-loop_128
          Length = 128

 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 9  cctctttgtattcttccacagctttcttgaacagcatc 46
          |||||||||||||||||||||||||||||||| |||||
Sbjct: 2  cctctttgtattcttccacagctttcttgaactgcatc 39



 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 114 tttgcggttcaataaagctgtgggaagatacaga 147
           ||||||||||||||||||||||||||||||||||
Sbjct: 90  tttgcggttcaataaagctgtgggaagatacaga 123


>ath-MIR396a_MI0001013_Arabidopsis_thaliana_miR396a_stem-loop_151
          Length = 151

 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 114 tttgcggttcaataaagctgtgggaagatacaga 147
           ||||||||||||||||||||||||||||||||||
Sbjct: 117 tttgcggttcaataaagctgtgggaagatacaga 150



 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 15 tgtattcttccacagctttcttgaac 40
          ||||||||||||||||||||||||||
Sbjct: 4  tgtattcttccacagctttcttgaac 29


>bcy-MIR396a_MI0016987_Bruguiera_cylindrica_miR396a_stem-loop_128
          Length = 128

 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 9  cctctttgtattcttccacagctttcttgaacagcatc 46
          |||||||||||||||||||||||||||||||| |||||
Sbjct: 2  cctctttgtattcttccacagctttcttgaactgcatc 39



 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 114 tttgcggttcaataaagctgtgggaagatacaga 147
           ||||||||||||||||||||||||||||||||||
Sbjct: 90  tttgcggttcaataaagctgtgggaagatacaga 123


>lja-MIR396_MI0010581_Lotus_japonicus_miR396_stem-loop_108
          Length = 108

 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 8  tcctctttgtattcttccacagctttcttgaacagcat 45
          ||||||||||||||||||||||||||||||||| ||||
Sbjct: 2  tcctctttgtattcttccacagctttcttgaactgcat 39



 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 114 tttgcggttcaataaagctgtgggaagatacagatagg 151
           |||||||||||||||||||||||||||||| |||||||
Sbjct: 70  tttgcggttcaataaagctgtgggaagatatagatagg 107


>tcc-MIR396b_MI0017512_Theobroma_cacao_miR396b_stem-loop_151
          Length = 151

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 9  cctctttgtattcttccacagctttcttgaac 40
          ||||||||||||||||||||||||||||||||
Sbjct: 8  cctctttgtattcttccacagctttcttgaac 39



 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 115 ttgcggttcaataaagctgtgggaagatac 144
           |||| |||||||||||||||||||||||||
Sbjct: 108 ttgcagttcaataaagctgtgggaagatac 137


>ptc-MIR396a_MI0002325_Populus_trichocarpa_miR396a_stem-loop_123
          Length = 123

 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 115 ttgcggttcaataaagctgtgggaagataca 145
           |||||||||||||||||||||||||||||||
Sbjct: 92  ttgcggttcaataaagctgtgggaagataca 122



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 gtattcttccacagctttcttgaac 40
          |||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaac 29


>ghr-MIR396a_MI0005650_Gossypium_hirsutum_miR396a_stem-loop_136
          Length = 136

 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 115 ttgcggttcaataaagctgtgggaagataca 145
           |||||||||||||||||||||||||||||||
Sbjct: 102 ttgcggttcaataaagctgtgggaagataca 132



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 gtattcttccacagctttcttgaac 40
          |||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaac 29


>ghr-MIR396b_MI0005651_Gossypium_hirsutum_miR396b_stem-loop_135
          Length = 135

 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 115 ttgcggttcaataaagctgtgggaagataca 145
           |||||||||||||||||||||||||||||||
Sbjct: 102 ttgcggttcaataaagctgtgggaagataca 132



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 gtattcttccacagctttcttgaac 40
          |||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaac 29


>aly-MIR396a_MI0014581_Arabidopsis_lyrata_miR396a_stem-loop_172
          Length = 172

 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 114 tttgcggttcaataaagctgtgggaagatac 144
           |||||||||||||||||||||||||||||||
Sbjct: 127 tttgcggttcaataaagctgtgggaagatac 157



 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 9  cctctttgtattcttccacagctttcttgaac 40
          ||||| ||||||||||||||||||||||||||
Sbjct: 11 cctctctgtattcttccacagctttcttgaac 42


>ptc-MIR396b_MI0002326_Populus_trichocarpa_miR396b_stem-loop_132
          Length = 132

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 116 tgcggttcaataaagctgtgggaagataca 145
           ||||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagataca 131



 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 12 ctttgtattcttccacagctttcttgaac 40
          |||||||||||||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaac 29


>vvi-MIR396d_MI0006571_Vitis_vinifera_miR396d_stem-loop_120
          Length = 120

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 12 ctttgtattcttccacagctttcttgaacagcat 45
          ||||||||||||||||||||||||||||| ||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcat 34



 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 115 ttgcggttcaataaagctgtgggaagatac 144
           ||||||||||||||||||||||||||||||
Sbjct: 85  ttgcggttcaataaagctgtgggaagatac 114


>mtr-MIR396b_MI0005622_Medicago_truncatula_miR396b_stem-loop_95
          Length = 95

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 114 tttgcggttcaataaagctgtgggaagata 143
           ||||||||||||||||||||||||||||||
Sbjct: 66  tttgcggttcaataaagctgtgggaagata 95



 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 17 tattcttccacagctttcttgaacagcatcca 48
          |||||||||||||||||||||||| |||||||
Sbjct: 1  tattcttccacagctttcttgaactgcatcca 32


>aqc-MIR396a_MI0012094_Aquilegia_caerulea_miR396a_stem-loop_122
          Length = 122

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 114 tttgcggttcaataaagctgtgggaa 139
           ||||||||||||||||||||||||||
Sbjct: 96  tttgcggttcaataaagctgtgggaa 121



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 22 ttccacagctttcttgaacagcat 45
          ||||||||||||||||||| ||||
Sbjct: 1  ttccacagctttcttgaactgcat 24


>csi-MIR396a_MI0016706_Citrus_sinensis_miR396a_stem-loop_153
          Length = 153

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 8  tcctctttgtattcttccacagctttcttgaac 40
          ||||||||||  |||||||||||||||||||||
Sbjct: 7  tcctctttgtgatcttccacagctttcttgaac 39



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 7   atcctctttgtattcttccacagctttcttgaa 39
           |||||||| ||| | ||||||||||||||||||
Sbjct: 122 atcctcttagtagttttccacagctttcttgaa 90


>sbi-MIR396b_MI0001538_Sorghum_bicolor_miR396b_stem-loop_128
          Length = 128

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 11 tctttgtattcttccacagctttcttgaacagcatc 46
          |||||||  ||||||||||||||||||||| |||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 91  gttcaataaagctgtgggaa 110


>zma-MIR396b_MI0001800_Zea_mays_miR396b_stem-loop_136
          Length = 136

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 11 tctttgtattcttccacagctttcttgaacagcatc 46
          |||||||  ||||||||||||||||||||| |||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 99  gttcaataaagctgtgggaa 118


>sof-MIR396_MI0001755_Saccharum_officinarum_miR396_stem-loop_134
          Length = 134

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 11 tctttgtattcttccacagctttcttgaacagcatc 46
          |||||||  ||||||||||||||||||||| |||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 97  gttcaataaagctgtgggaa 116


>zma-MIR396h_MI0013228_Zea_mays_miR396h_stem-loop_124
          Length = 124

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 11  tctttgtattcttccacagctttcttgaacagcatc 46
           |||||||  ||||||||||||||||||||| |||||
Sbjct: 109 tctttgtgatcttccacagctttcttgaactgcatc 74



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 20  gttcaataaagctgtgggaa 1


>ssl-MIR396_MI0019351_Salvia_sclarea_miR396_stem-loop_89
          Length = 89

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 116 tgcggttcaataaagctgtggga 138
           |||||||||||||||||||||||
Sbjct: 67  tgcggttcaataaagctgtggga 89



 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaac 19


>osa-MIR396b_MI0001047_Oryza_sativa_miR396b_stem-loop_116
          Length = 116

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 20 tcttccacagctttcttgaacagcatc 46
          ||||||||||||||||||||| |||||
Sbjct: 9  tcttccacagctttcttgaactgcatc 35



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 88  gttcaataaagctgtgggaa 107


>zma-MIR396g_MI0013227_Zea_mays_miR396g_stem-loop_114
          Length = 114

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 20  tcttccacagctttcttgaacagcatc 46
           ||||||||||||||||||||| |||||
Sbjct: 113 tcttccacagctttcttgaactgcatc 87



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 20  gttcaataaagctgtgggaa 1


>bdi-MIR396d_MI0018096_Brachypodium_distachyon_miR396d_stem-
          loop_152
          Length = 152

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 20 tcttccacagctttcttgaacagcatc 46
          ||||||||||||||||||||| |||||
Sbjct: 31 tcttccacagctttcttgaactgcatc 57



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 101 gttcaataaagctgtgggaa 120


>sbi-MIR396a_MI0001539_Sorghum_bicolor_miR396a_stem-loop_125
          Length = 125

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 20 tcttccacagctttcttgaacagcat 45
          ||||||||||||||||||||| ||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 88  gttcaataaagctgtgggaa 107


>zma-MIR396a_MI0001801_Zea_mays_miR396a_stem-loop_137
          Length = 137

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 20 tcttccacagctttcttgaacagcat 45
          ||||||||||||||||||||| ||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119


>ssp-MIR396_MI0018195_Saccharum_ssp._miR396_stem-loop_95
          Length = 95

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 22 ttccacagctttcttgaacagcatc 46
          ||||||||||||||||||| |||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25



 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 120 gttcaataaagctgtggga 138
           |||||||||||||||||||
Sbjct: 77  gttcaataaagctgtggga 95


>pab-MIR396a_MI0016122_Picea_abies_miR396a_stem-loop_100
          Length = 100

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 tcttccacagctttcttgaac 40
          |||||||||||||||||||||
Sbjct: 14 tcttccacagctttcttgaac 34


>bdi-MIR396c_MI0018101_Brachypodium_distachyon_miR396c_stem-
          loop_153
          Length = 153

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 tcttccacagctttcttgaac 40
          |||||||||||||||||||||
Sbjct: 31 tcttccacagctttcttgaac 51



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 102 gttcaataaagctgtgggaa 121


>gma-MIR396e_MI0016586_Glycine_max_miR396e_stem-loop_114
          Length = 114

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 tcttccacagctttcttgaac 40
          |||||||||||||||||||||
Sbjct: 5  tcttccacagctttcttgaac 25


>vvi-MIR396c_MI0007955_Vitis_vinifera_miR396c_stem-loop_108
          Length = 108

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 tcttccacagctttcttgaac 40
          |||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaac 29


>osa-MIR396a_MI0001046_Oryza_sativa_miR396a_stem-loop_154
          Length = 154

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 tcttccacagctttcttgaac 40
          |||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaac 29



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145


>gma-MIR396h_MI0018679_Glycine_max_miR396h_stem-loop_148
          Length = 148

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 tcttccacagctttcttgaac 40
          |||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaac 39


>aly-MIR396b_MI0014582_Arabidopsis_lyrata_miR396b_stem-loop_188
          Length = 188

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 17 tattcttccacagctttcttgaac 40
          |||| |||||||||||||||||||
Sbjct: 27 tatttttccacagctttcttgaac 50


>bcy-MIR396b_MI0016988_Bruguiera_cylindrica_miR396b_stem-loop_99
          Length = 99

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 7  ttccacagctttcttgaac 25


>csi-MIR396c_MI0016735_Citrus_sinensis_miR396c_stem-loop_178
          Length = 178

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 13 ttccacagctttcttgaac 31


>ccl-MIR396_MI0013304_Citrus_clementine_miR396_stem-loop_277
          Length = 277

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 22  ttccacagctttcttgaac 40
           |||||||||||||||||||
Sbjct: 143 ttccacagctttcttgaac 161


>tcc-MIR396e_MI0017515_Theobroma_cacao_miR396e_stem-loop_146
          Length = 146

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaac 39


>rco-MIR396_MI0013418_Ricinus_communis_miR396_stem-loop_124
          Length = 124

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaac 24


>bdi-MIR396e_MI0018108_Brachypodium_distachyon_miR396e_stem-
          loop_201
          Length = 201

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 32 ttccacagctttcttgaac 50


>pta-MIR396_MI0005788_Pinus_taeda_miR396_stem-loop_119
          Length = 119

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaac 35


>zma-MIR396e_MI0013225_Zea_mays_miR396e_stem-loop_166
          Length = 166

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 2  ttccacagctttcttgaac 20


>mdm-MIR396c_MI0023095_107
          Length = 107

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 12 ttccacagctttcttgaac 30


>aqc-MIR396b_MI0012095_Aquilegia_caerulea_miR396b_stem-loop_89
          Length = 89

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaac 19


>osa-MIR396c_MI0001048_Oryza_sativa_miR396c_stem-loop_141
          Length = 141

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaac 29


>mdm-MIR396d_MI0023096_103
          Length = 103

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 10 ttccacagctttcttgaac 28


>bgy-MIR396b_MI0016984_Bruguiera_gymnorhiza_miR396b_stem-loop_99
          Length = 99

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 7  ttccacagctttcttgaac 25


>ptc-MIR396e_MI0002329_Populus_trichocarpa_miR396e_stem-loop_145
          Length = 145

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaac 29


>gma-MIR396g_MI0017921_Glycine_max_miR396g_stem-loop_151
          Length = 151

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 56 ttccacagctttcttgaac 74


>bna-MIR396a_MI0005773_Brassica_napus_miR396a_stem-loop_117
          Length = 117

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaac 19


>gma-MIR396d_MI0016503_Glycine_max_miR396d_stem-loop_108
          Length = 108

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaac 29


>sbi-MIR396c_MI0001540_Sorghum_bicolor_miR396c_stem-loop_162
          Length = 162

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaac 39


>ptc-MIR396d_MI0002328_Populus_trichocarpa_miR396d_stem-loop_154
          Length = 154

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaac 29


>ptc-MIR396c_MI0002327_Populus_trichocarpa_miR396c_stem-loop_102
          Length = 102

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaac 29


>mtr-MIR396a_MI0005621_Medicago_truncatula_miR396a_stem-loop_93
          Length = 93

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaac 24


>vvi-MIR396a_MI0006569_Vitis_vinifera_miR396a_stem-loop_116
          Length = 116

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaac 32


>gma-MIR396f_MI0017919_Glycine_max_miR396f_stem-loop_151
          Length = 151

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 56 ttccacagctttcttgaac 74


>gma-MIR396c_MI0010572_Glycine_max_miR396c_stem-loop_117
          Length = 117

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaac 39


>mdm-MIR396e_MI0023097_107
          Length = 107

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 12 ttccacagctttcttgaac 30


>tcc-MIR396c_MI0017513_Theobroma_cacao_miR396c_stem-loop_152
          Length = 152

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaac 39


>gma-MIR396b_MI0001786_Glycine_max_miR396b_stem-loop_126
          Length = 126

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaac 39


>vvi-MIR396b_MI0006570_Vitis_vinifera_miR396b_stem-loop_108
          Length = 108

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaac 32


>ath-MIR396b_MI0001014_Arabidopsis_thaliana_miR396b_stem-loop_135
          Length = 135

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaac 29


>zma-MIR396f_MI0013226_Zea_mays_miR396f_stem-loop_117
          Length = 117

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 2  ttccacagctttcttgaac 20


>tcc-MIR396a_MI0017511_Theobroma_cacao_miR396a_stem-loop_146
          Length = 146

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 ttccacagctttcttgaac 40
          |||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaac 39


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.