(139 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR164d_MI0023014_135                                             268   4e-73
mdm-MIR164b_MI0023012_118                                              84   1e-17
tcc-MIR164b_MI0017465_Theobroma_cacao_miR164b_stem-loop_130            72   5e-14
tcc-MIR164a_MI0017464_Theobroma_cacao_miR164a_stem-loop_128            66   3e-12
ghr-MIR164_MI0013538_Gossypium_hirsutum_miR164_stem-loop_101           62   5e-11
gma-MIR164d_MI0017828_Glycine_max_miR164d_stem-loop_90                 58   7e-10
gma-MIR164b_MI0017826_Glycine_max_miR164b_stem-loop_90                 56   3e-09
bdi-MIR164e_MI0018215_Brachypodium_distachyon_miR164e_stem-loop_127    56   3e-09
gma-MIR164_MI0007209_Glycine_max_miR164_stem-loop_95                   56   3e-09
mtr-MIR164a_MI0005573_Medicago_truncatula_miR164a_stem-loop_99         54   1e-08
rco-MIR164b_MI0013383_Ricinus_communis_miR164b_stem-loop_104           52   4e-08
mdm-MIR164c_MI0023013_117                                              52   4e-08
ath-MIR164a_MI0000197_Arabidopsis_thaliana_miR164a_stem-loop_113       52   4e-08
bna-MIR164_MI0006478_Brassica_napus_miR164_stem-loop_86                50   2e-07
vvi-MIR164a_MI0006503_Vitis_vinifera_miR164a_stem-loop_121             50   2e-07
ptc-MIR164c_MI0002214_Populus_trichocarpa_miR164c_stem-loop_82         50   2e-07
mtr-MIR164c_MI0005616_Medicago_truncatula_miR164c_stem-loop_86         50   2e-07
vun-MIR164_MI0019570_Vigna_unguiculata_miR164_stem-loop_72             50   2e-07
aly-MIR164a_MI0014527_Arabidopsis_lyrata_miR164a_stem-loop_79          50   2e-07
bra-MIR164a_MI0010651_Brassica_rapa_miR164a_stem-loop_92               50   2e-07
vvi-MIR164d_MI0006506_Vitis_vinifera_miR164d_stem-loop_118             48   7e-07
sbi-MIR164e_MI0010866_Sorghum_bicolor_miR164e_stem-loop_205            46   3e-06
bdi-MIR164b_MI0018094_Brachypodium_distachyon_miR164b_stem-loop_209    46   3e-06
osa-MIR164a_MI0000668_Oryza_sativa_miR164a_stem-loop_156               46   3e-06
ptc-MIR164a_MI0002212_Populus_trichocarpa_miR164a_stem-loop_85         46   3e-06
bdi-MIR164d_MI0018214_Brachypodium_distachyon_miR164d_stem-loop_186    46   3e-06
ptc-MIR164d_MI0002215_Populus_trichocarpa_miR164d_stem-loop_99         46   3e-06
mtr-MIR164b_MI0005612_Medicago_truncatula_miR164b_stem-loop_144        44   1e-05
osa-MIR164c_MI0001103_Oryza_sativa_miR164c_stem-loop_119               44   1e-05
zma-MIR164g_MI0013195_Zea_mays_miR164g_stem-loop_171                   44   1e-05
gma-MIR164c_MI0017827_Glycine_max_miR164c_stem-loop_90                 44   1e-05
rco-MIR164a_MI0013382_Ricinus_communis_miR164a_stem-loop_78            44   1e-05
zma-MIR164a_MI0001469_Zea_mays_miR164a_stem-loop_152                   42   4e-05
rco-MIR164c_MI0013384_Ricinus_communis_miR164c_stem-loop_116           42   4e-05
ptc-MIR164b_MI0002213_Populus_trichocarpa_miR164b_stem-loop_162        42   4e-05
aly-MIR164b_MI0014528_Arabidopsis_lyrata_miR164b_stem-loop_161         42   4e-05
ptc-MIR164e_MI0002216_Populus_trichocarpa_miR164e_stem-loop_155        42   4e-05
tae-MIR164_MI0006173_Triticum_aestivum_miR164_stem-loop_156            42   4e-05
sbi-MIR164d_MI0010865_Sorghum_bicolor_miR164d_stem-loop_160            42   4e-05
osa-MIR164f_MI0001159_Oryza_sativa_miR164f_stem-loop_210               42   4e-05
vvi-MIR164c_MI0006505_Vitis_vinifera_miR164c_stem-loop_97              42   4e-05
csi-MIR164_MI0013295_Citrus_sinensis_miR164_stem-loop_278              42   4e-05
zma-MIR164d_MI0001470_Zea_mays_miR164d_stem-loop_216                   42   4e-05
bdi-MIR164a_MI0018118_Brachypodium_distachyon_miR164a_stem-loop_193    42   4e-05
ctr-MIR164_MI0013306_Citrus_trifoliata_miR164_stem-loop_297            42   4e-05
bdi-MIR164f_MI0018216_Brachypodium_distachyon_miR164f_stem-loop_161    42   4e-05
zma-MIR164c_MI0001472_Zea_mays_miR164c_stem-loop_270                   42   4e-05
sbi-MIR164_MI0001512_Sorghum_bicolor_miR164_stem-loop_126              42   4e-05
mdm-MIR164f_MI0023016_170                                              42   4e-05
aly-MIR164c_MI0014529_Arabidopsis_lyrata_miR164c_stem-loop_115         42   4e-05
zma-MIR164b_MI0001471_Zea_mays_miR164b_stem-loop_128                   42   4e-05
mdm-MIR164e_MI0023015_164                                              42   4e-05
ath-MIR164b_MI0000198_Arabidopsis_thaliana_miR164b_stem-loop_153       42   4e-05
osa-MIR164b_MI0000669_Oryza_sativa_miR164b_stem-loop_109               42   4e-05
ssl-MIR164b_MI0019342_Salvia_sclarea_miR164b_stem-loop_94              42   4e-05
sbi-MIR164b_MI0001549_Sorghum_bicolor_miR164b_stem-loop_111            40   2e-04
bdi-MIR164c_MI0018152_Brachypodium_distachyon_miR164c_stem-loop_138    40   2e-04
osa-MIR164d_MI0001104_Oryza_sativa_miR164d_stem-loop_94                40   2e-04
zma-MIR164f_MI0013194_Zea_mays_miR164f_stem-loop_108                   40   2e-04
cme-MIR164_MI0018163_Cucumis_melo_miR164_stem-loop_91                  40   2e-04
ath-MIR164c_MI0001087_Arabidopsis_thaliana_miR164c_stem-loop_102       40   2e-04
osa-MIR164e_MI0001105_Oryza_sativa_miR164e_stem-loop_132               38   7e-04
zma-MIR164h_MI0013196_Zea_mays_miR164h_stem-loop_219                   38   7e-04

>mdm-MIR164d_MI0023014_135
          Length = 135

 Score =  268 bits (135), Expect = 4e-73
 Identities = 135/135 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   tgggtgagtagctcctgttggagaagcagggcacgtgcaaattctagctcaagcacttcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgggtgagtagctcctgttggagaagcagggcacgtgcaaattctagctcaagcacttcc 60

                                                                       
Query: 64  tccctgggagcttagcttaagatttaacaaagctttgcacgtgctccccttctccaacac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tccctgggagcttagcttaagatttaacaaagctttgcacgtgctccccttctccaacac 120

                          
Query: 124 aagtttctcacctca 138
           |||||||||||||||
Sbjct: 121 aagtttctcacctca 135


>mdm-MIR164b_MI0023012_118
          Length = 118

 Score = 83.8 bits (42), Expect = 1e-17
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                
Query: 5  gggtgagtagctcctgttggagaagcagggcacgtgcaaattctagctcaagca 58
          |||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1  gggtgagtagttcgtgttggagaagcagggcacgtgcaaattctagctcgagca 54



 Score = 58.0 bits (29), Expect = 7e-10
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 96  ctttgcacgtgctccccttctccaacacaagtttctcacct 136
           |||||||| ||||| |||||||||||||||| |||||||||
Sbjct: 78  ctttgcacttgctcrccttctccaacacaagcttctcacct 118


>tcc-MIR164b_MI0017465_Theobroma_cacao_miR164b_stem-loop_130
          Length = 130

 Score = 71.9 bits (36), Expect = 5e-14
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                  
Query: 4  tgggtgagtagctcctgttggagaagcagggcacgtgcaa 43
          |||||||||||||| |||||||||||||||||||||||||
Sbjct: 3  tgggtgagtagctcttgttggagaagcagggcacgtgcaa 42



 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  tgcacgtgctccccttctcca 119
           |||||||||||||||||||||
Sbjct: 90  tgcacgtgctccccttctcca 110


>tcc-MIR164a_MI0017464_Theobroma_cacao_miR164a_stem-loop_128
          Length = 128

 Score = 65.9 bits (33), Expect = 3e-12
 Identities = 40/41 (97%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                   
Query: 5  gggtgagtagctcct-gttggagaagcagggcacgtgcaaa 44
          ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3  gggtgagtagctccttgttggagaagcagggcacgtgcaaa 43



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 99  tgcacgtgctccccttctccaacac 123
           |||||||||||||||||||||||||
Sbjct: 88  tgcacgtgctccccttctccaacac 112


>ghr-MIR164_MI0013538_Gossypium_hirsutum_miR164_stem-loop_101
          Length = 101

 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                 
Query: 5  gggtgagtagctcctgttggagaagcagggcacgtgcaa 43
          ||||||||| ||| |||||||||||||||||||||||||
Sbjct: 2  gggtgagtatctcttgttggagaagcagggcacgtgcaa 40



 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 96  ctttgcacgtgctccccttctcca 119
           ||||||||||||||||||||||||
Sbjct: 60  ctttgcacgtgctccccttctcca 83


>gma-MIR164d_MI0017828_Glycine_max_miR164d_stem-loop_90
          Length = 90

 Score = 58.0 bits (29), Expect = 7e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 15 ctcctgttggagaagcagggcacgtgcaa 43
          |||||||||||||||||||||||||||||
Sbjct: 6  ctcctgttggagaagcagggcacgtgcaa 34



 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 97  tttgcacgtgctccccttctccaacac 123
           |||||||||||||||||||||||||||
Sbjct: 56  tttgcacgtgctccccttctccaacac 82


>gma-MIR164b_MI0017826_Glycine_max_miR164b_stem-loop_90
          Length = 90

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 96  ctttgcacgtgctccccttctccaacac 123
           ||||||||||||||||||||||||||||
Sbjct: 63  ctttgcacgtgctccccttctccaacac 90



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 tgttggagaagcagggcacgtgcaa 43
          |||||||||||||||||||||||||
Sbjct: 7  tgttggagaagcagggcacgtgcaa 31


>bdi-MIR164e_MI0018215_Brachypodium_distachyon_miR164e_stem-
          loop_127
          Length = 127

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 17 cctgttggagaagcagggcacgtgcaaa 44
          ||||||||||||||||||||||||||||
Sbjct: 14 cctgttggagaagcagggcacgtgcaaa 41


>gma-MIR164_MI0007209_Glycine_max_miR164_stem-loop_95
          Length = 95

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 96  ctttgcacgtgctccccttctccaacac 123
           ||||||||||||||||||||||||||||
Sbjct: 62  ctttgcacgtgctccccttctccaacac 89



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 tgttggagaagcagggcacgtgcaa 43
          |||||||||||||||||||||||||
Sbjct: 8  tgttggagaagcagggcacgtgcaa 32


>mtr-MIR164a_MI0005573_Medicago_truncatula_miR164a_stem-loop_99
          Length = 99

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 19 tgttggagaagcagggcacgtgcaaat 45
          |||||||||||||||||||||||||||
Sbjct: 3  tgttggagaagcagggcacgtgcaaat 29



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 97  tttgcacgtgctccccttctccaac 121
           |||||||||||||||||||||||||
Sbjct: 71  tttgcacgtgctccccttctccaac 95


>rco-MIR164b_MI0013383_Ricinus_communis_miR164b_stem-loop_104
          Length = 104

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 97  tttgcacgtgctccccttctccaaca 122
           ||||||||||||||||||||||||||
Sbjct: 75  tttgcacgtgctccccttctccaaca 100



 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 17 cctgttggagaagcagggcacgtgcaaa 44
          |||| |||||||||||||||||||||||
Sbjct: 1  cctgctggagaagcagggcacgtgcaaa 28


>mdm-MIR164c_MI0023013_117
          Length = 117

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 19 tgttggagaagcagggcacgtgcaaa 44
          ||||||||||||||||||||||||||
Sbjct: 14 tgttggagaagcagggcacgtgcaaa 39



 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 97  tttgcacgtgctccccttctccaacacaagtttctcacct 136
           |||||||||||||||| ||||||||||  ||| |||||||
Sbjct: 78  tttgcacgtgctccccctctccaacacgggttcctcacct 117


>ath-MIR164a_MI0000197_Arabidopsis_thaliana_miR164a_stem-loop_113
          Length = 113

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 19 tgttggagaagcagggcacgtgcaaa 44
          ||||||||||||||||||||||||||
Sbjct: 16 tgttggagaagcagggcacgtgcaaa 41


>bna-MIR164_MI0006478_Brassica_napus_miR164_stem-loop_86
          Length = 86

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 gttggagaagcagggcacgtgcaaa 44
          |||||||||||||||||||||||||
Sbjct: 5  gttggagaagcagggcacgtgcaaa 29


>vvi-MIR164a_MI0006503_Vitis_vinifera_miR164a_stem-loop_121
          Length = 121

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 98  ttgcacgtgctccccttctccaaca 122
           |||||||||||||||||||||||||
Sbjct: 88  ttgcacgtgctccccttctccaaca 112



 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgttggagaagcagggcacgtgca 42
          ||||||||||||||||||||||||
Sbjct: 8  tgttggagaagcagggcacgtgca 31


>ptc-MIR164c_MI0002214_Populus_trichocarpa_miR164c_stem-loop_82
          Length = 82

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 98  ttgcacgtgctccccttctccaaca 122
           |||||||||||||||||||||||||
Sbjct: 53  ttgcacgtgctccccttctccaaca 77



 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 12 tagctcctgttggagaagcagggcacgtgcaa 43
          |||||| || ||||||||||||||||||||||
Sbjct: 1  tagctcttgctggagaagcagggcacgtgcaa 32


>mtr-MIR164c_MI0005616_Medicago_truncatula_miR164c_stem-loop_86
          Length = 86

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 tgttggagaagcagggcacgtgcaa 43
          |||||||||||||||||||||||||
Sbjct: 3  tgttggagaagcagggcacgtgcaa 27


>vun-MIR164_MI0019570_Vigna_unguiculata_miR164_stem-loop_72
          Length = 72

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 98  ttgcacgtgctccccttctccaaca 122
           |||||||||||||||||||||||||
Sbjct: 25  ttgcacgtgctccccttctccaaca 1



 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 20 gttggagaagcagggcacgtgcaa 43
          ||||||||||||||||||||||||
Sbjct: 72 gttggagaagcagggcacgtgcaa 49


>aly-MIR164a_MI0014527_Arabidopsis_lyrata_miR164a_stem-loop_79
          Length = 79

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 gttggagaagcagggcacgtgcaaa 44
          |||||||||||||||||||||||||
Sbjct: 1  gttggagaagcagggcacgtgcaaa 25



 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 97  tttgcacgtgctccccttctccaac 121
           ||||||||| |||||||||||||||
Sbjct: 55  tttgcacgtactccccttctccaac 79


>bra-MIR164a_MI0010651_Brassica_rapa_miR164a_stem-loop_92
          Length = 92

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 gttggagaagcagggcacgtgcaaa 44
          |||||||||||||||||||||||||
Sbjct: 8  gttggagaagcagggcacgtgcaaa 32


>vvi-MIR164d_MI0006506_Vitis_vinifera_miR164d_stem-loop_118
          Length = 118

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 99  tgcacgtgctccccttctccaaca 122
           ||||||||||||||||||||||||
Sbjct: 86  tgcacgtgctccccttctccaaca 109



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 13 agctcctgttggagaagcagggcacgtgca 42
          ||||| || |||||||||||||||||||||
Sbjct: 2  agctcttgatggagaagcagggcacgtgca 31


>sbi-MIR164e_MI0010866_Sorghum_bicolor_miR164e_stem-loop_205
          Length = 205

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 gttggagaagcagggcacgtgca 42
          |||||||||||||||||||||||
Sbjct: 1  gttggagaagcagggcacgtgca 23



 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  tgcacgtgctccccttctcca 119
           |||||||||||||||||||||
Sbjct: 181 tgcacgtgctccccttctcca 201


>bdi-MIR164b_MI0018094_Brachypodium_distachyon_miR164b_stem-
          loop_209
          Length = 209

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 gttggagaagcagggcacgtgca 42
          |||||||||||||||||||||||
Sbjct: 31 gttggagaagcagggcacgtgca 53


>osa-MIR164a_MI0000668_Oryza_sativa_miR164a_stem-loop_156
          Length = 156

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 gttggagaagcagggcacgtgca 42
          |||||||||||||||||||||||
Sbjct: 15 gttggagaagcagggcacgtgca 37


>ptc-MIR164a_MI0002212_Populus_trichocarpa_miR164a_stem-loop_85
          Length = 85

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 tggagaagcagggcacgtgcaaa 44
          |||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaaa 33


>bdi-MIR164d_MI0018214_Brachypodium_distachyon_miR164d_stem-
          loop_186
          Length = 186

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 gttggagaagcagggcacgtgca 42
          |||||||||||||||||||||||
Sbjct: 16 gttggagaagcagggcacgtgca 38


>ptc-MIR164d_MI0002215_Populus_trichocarpa_miR164d_stem-loop_99
          Length = 99

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 tggagaagcagggcacgtgcaaa 44
          |||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaaa 33



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 96  ctttgcacgtgctccccttctccaaca 122
           |||||||||||||||||| ||||||||
Sbjct: 68  ctttgcacgtgctcccctcctccaaca 94


>mtr-MIR164b_MI0005612_Medicago_truncatula_miR164b_stem-loop_144
          Length = 144

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tggagaagcagggcacgtgcaa 43
          ||||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgcaa 27


>osa-MIR164c_MI0001103_Oryza_sativa_miR164c_stem-loop_119
          Length = 119

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 19 tgttggagaagcagggcacgtgcaaa 44
          |||||||||||||||| |||||||||
Sbjct: 8  tgttggagaagcagggtacgtgcaaa 33



 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  tgcacgtgctccccttctcca 119
           |||||||||||||||||||||
Sbjct: 89  tgcacgtgctccccttctcca 109


>zma-MIR164g_MI0013195_Zea_mays_miR164g_stem-loop_171
          Length = 171

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ttggagaagcagggcacgtgca 42
          ||||||||||||||||||||||
Sbjct: 1  ttggagaagcagggcacgtgca 22



 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  tgcacgtgctccccttctcca 119
           |||||||||||||||||||||
Sbjct: 148 tgcacgtgctccccttctcca 168


>gma-MIR164c_MI0017827_Glycine_max_miR164c_stem-loop_90
          Length = 90

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tggagaagcagggcacgtgcaa 43
          ||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32


>rco-MIR164a_MI0013382_Ricinus_communis_miR164a_stem-loop_78
          Length = 78

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tggagaagcagggcacgtgcaa 43
          ||||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgcaa 27



 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 98  ttgcacgtgctccccttctccaaca 122
           ||||||||||||| |||||||||||
Sbjct: 50  ttgcacgtgctccacttctccaaca 74


>zma-MIR164a_MI0001469_Zea_mays_miR164a_stem-loop_152
          Length = 152

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 19 tggagaagcagggcacgtgca 39


>rco-MIR164c_MI0013384_Ricinus_communis_miR164c_stem-loop_116
          Length = 116

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgca 26


>ptc-MIR164b_MI0002213_Populus_trichocarpa_miR164b_stem-loop_162
          Length = 162

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31


>aly-MIR164b_MI0014528_Arabidopsis_lyrata_miR164b_stem-loop_161
          Length = 161

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgca 23


>ptc-MIR164e_MI0002216_Populus_trichocarpa_miR164e_stem-loop_155
          Length = 155

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31


>tae-MIR164_MI0006173_Triticum_aestivum_miR164_stem-loop_156
          Length = 156

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgca 23


>sbi-MIR164d_MI0010865_Sorghum_bicolor_miR164d_stem-loop_160
          Length = 160

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21


>osa-MIR164f_MI0001159_Oryza_sativa_miR164f_stem-loop_210
          Length = 210

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 24 tggagaagcagggcacgtgca 44


>vvi-MIR164c_MI0006505_Vitis_vinifera_miR164c_stem-loop_97
          Length = 97

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31


>csi-MIR164_MI0013295_Citrus_sinensis_miR164_stem-loop_278
          Length = 278

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 14 tggagaagcagggcacgtgca 34


>zma-MIR164d_MI0001470_Zea_mays_miR164d_stem-loop_216
          Length = 216

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 20 tggagaagcagggcacgtgca 40


>bdi-MIR164a_MI0018118_Brachypodium_distachyon_miR164a_stem-
          loop_193
          Length = 193

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 31 tggagaagcagggcacgtgca 51


>ctr-MIR164_MI0013306_Citrus_trifoliata_miR164_stem-loop_297
          Length = 297

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 22 tggagaagcagggcacgtgca 42


>bdi-MIR164f_MI0018216_Brachypodium_distachyon_miR164f_stem-loop_161
          Length = 161

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 22  tggagaagcagggcacgtgca 42
           |||||||||||||||||||||
Sbjct: 144 tggagaagcagggcacgtgca 124


>zma-MIR164c_MI0001472_Zea_mays_miR164c_stem-loop_270
          Length = 270

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 18 tggagaagcagggcacgtgca 38


>sbi-MIR164_MI0001512_Sorghum_bicolor_miR164_stem-loop_126
          Length = 126

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21


>mdm-MIR164f_MI0023016_170
          Length = 170

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgca 23


>aly-MIR164c_MI0014529_Arabidopsis_lyrata_miR164c_stem-loop_115
          Length = 115

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                               
Query: 5  gggtgagtagctcctgttggagaagcagggcacgtgc 41
          ||||||||| | | || ||||||||||||||||||||
Sbjct: 1  gggtgagtaacacttgatggagaagcagggcacgtgc 37


>zma-MIR164b_MI0001471_Zea_mays_miR164b_stem-loop_128
          Length = 128

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgca 41


>mdm-MIR164e_MI0023015_164
          Length = 164

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgca 23


>ath-MIR164b_MI0000198_Arabidopsis_thaliana_miR164b_stem-loop_153
          Length = 153

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgca 23


>osa-MIR164b_MI0000669_Oryza_sativa_miR164b_stem-loop_109
          Length = 109

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 9  tggagaagcagggcacgtgca 29


>ssl-MIR164b_MI0019342_Salvia_sclarea_miR164b_stem-loop_94
          Length = 94

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tggagaagcagggcacgtgca 42
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21


>sbi-MIR164b_MI0001549_Sorghum_bicolor_miR164b_stem-loop_111
          Length = 111

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 tggagaagcagggcacgtgc 41
          ||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgc 40


>bdi-MIR164c_MI0018152_Brachypodium_distachyon_miR164c_stem-
          loop_138
          Length = 138

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 tggagaagcagggcacgtgc 41
          ||||||||||||||||||||
Sbjct: 34 tggagaagcagggcacgtgc 53


>osa-MIR164d_MI0001104_Oryza_sativa_miR164d_stem-loop_94
          Length = 94

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 tggagaagcagggcacgtgc 41
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30


>zma-MIR164f_MI0013194_Zea_mays_miR164f_stem-loop_108
          Length = 108

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 tggagaagcagggcacgtgc 41
          ||||||||||||||||||||
Sbjct: 2  tggagaagcagggcacgtgc 21


>cme-MIR164_MI0018163_Cucumis_melo_miR164_stem-loop_91
          Length = 91

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 tggagaagcagggcacgtgc 41
          ||||||||||||||||||||
Sbjct: 14 tggagaagcagggcacgtgc 33


>ath-MIR164c_MI0001087_Arabidopsis_thaliana_miR164c_stem-loop_102
          Length = 102

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 tggagaagcagggcacgtgc 41
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30


>osa-MIR164e_MI0001105_Oryza_sativa_miR164e_stem-loop_132
          Length = 132

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 tggagaagcagggcacgtg 40
          |||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtg 29


>zma-MIR164h_MI0013196_Zea_mays_miR164h_stem-loop_219
          Length = 219

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 tggagaagcagggcacgtg 40
          |||||||||||||||||||
Sbjct: 2  tggagaagcagggcacgtg 20


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.