(249 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR827_MI0023132_181                                              140   2e-34
ptc-MIR827_MI0007041_Populus_trichocarpa_miR827_stem-loop_76           52   7e-08
csi-MIR827_MI0016727_Citrus_sinensis_miR827_stem-loop_100              42   7e-05
tcc-MIR827_MI0017533_Theobroma_cacao_miR827_stem-loop_148              40   3e-04

>mdm-MIR827_MI0023132_181
          Length = 181

 Score =  140 bits (70), Expect = 2e-34
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                       
Query: 35  tttgcagcagtggatatgtttgttgctggtcacctagttattccatggttccatccatct 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttgcagcagtggatatgtttgttgctggtcacctagttattccatggttccatccatct 60

                     
Query: 95  gctggcttca 104
           ||||||||||
Sbjct: 61  gctggcttca 70



 Score =  112 bits (56), Expect = 6e-26
 Identities = 56/56 (100%)
 Strand = Plus / Plus

                                                                   
Query: 160 acccatggcggacgttctgattagatgaccatcaacgaacacattcatgatgcaag 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 acccatggcggacgttctgattagatgaccatcaacgaacacattcatgatgcaag 181


>ptc-MIR827_MI0007041_Populus_trichocarpa_miR827_stem-loop_76
          Length = 76

 Score = 52.4 bits (26), Expect = 7e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 179 attagatgaccatcaacgaacacattcatg 208
           |||||||||||||||||||| |||||||||
Sbjct: 47  attagatgaccatcaacgaaaacattcatg 76


>csi-MIR827_MI0016727_Citrus_sinensis_miR827_stem-loop_100
          Length = 100

 Score = 42.4 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 180 ttagatgaccatcaacgaacacattcatg 208
           |||||||||||||||| |||| |||||||
Sbjct: 61  ttagatgaccatcaacaaacatattcatg 89


>tcc-MIR827_MI0017533_Theobroma_cacao_miR827_stem-loop_148
          Length = 148

 Score = 40.4 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 180 ttagatgaccatcaacgaacacattcat 207
           |||||||||||||||| ||||| |||||
Sbjct: 108 ttagatgaccatcaacaaacactttcat 135


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.