(206 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR319b_MI0023072_193                                             383   e-107
mdm-MIR319a_MI0023071_195                                             301   4e-83
vvi-MIR319c_MI0006549_Vitis_vinifera_miR319c_stem-loop_182            194   7e-51
ptc-MIR319a_MI0002296_Populus_trichocarpa_miR319a_stem-loop_188       190   1e-49
rco-MIR319a_MI0013406_Ricinus_communis_miR319a_stem-loop_211          143   2e-35
ctr-MIR319_MI0013303_Citrus_trifoliata_miR319_stem-loop_186           143   2e-35
gma-MIR319a_MI0001782_Glycine_max_miR319a_stem-loop_207               127   1e-30
gma-MIR319b_MI0001783_Glycine_max_miR319b_stem-loop_208               121   9e-29
vun-MIR319a_MI0019574_Vigna_unguiculata_miR319a_stem-loop_207         113   2e-26
gma-MIR319j_MI0018675_Glycine_max_miR319j_stem-loop_179               103   2e-23
mtr-MIR319b_MI0005596_Medicago_truncatula_miR319b_stem-loop_180       101   8e-23
ptc-MIR319b_MI0002297_Populus_trichocarpa_miR319b_stem-loop_185        94   2e-20
aqc-MIR319_MI0012091_Aquilegia_caerulea_miR319_stem-loop_177           80   3e-16
sly-MIR319_MI0009978_Solanum_lycopersicum_miR319_stem-loop_168         78   1e-15
osa-MIR319b_MI0001099_Oryza_sativa_miR319b_stem-loop_197               58   1e-09
ptc-MIR319c_MI0002298_Populus_trichocarpa_miR319c_stem-loop_196        56   4e-09
rco-MIR319c_MI0013408_Ricinus_communis_miR319c_stem-loop_188           54   2e-08
gma-MIR319e_MI0017843_Glycine_max_miR319e_stem-loop_190                52   7e-08
gma-MIR319h_MI0018673_Glycine_max_miR319h_stem-loop_186                52   7e-08
mtr-MIR319_MI0001751_Medicago_truncatula_miR319_stem-loop_207          52   7e-08
osa-MIR319a_MI0001098_Oryza_sativa_miR319a_stem-loop_191               52   7e-08
sbi-MIR319_MI0001573_Sorghum_bicolor_miR319_stem-loop_249              50   3e-07
zma-MIR319b_MI0001815_Zea_mays_miR319b_stem-loop_213                   50   3e-07
aly-MIR319b_MI0014519_Arabidopsis_lyrata_miR319b_stem-loop_246         50   3e-07
ath-MIR319a_MI0000544_Arabidopsis_thaliana_miR319a_stem-loop_176       48   1e-06
gma-MIR319k_MI0018676_Glycine_max_miR319k_stem-loop_186                48   1e-06
vvi-MIR319f_MI0006550_Vitis_vinifera_miR319f_stem-loop_193             48   1e-06
aau-MIR319_MI0018982_Acacia_auriculiformis_miR319_stem-loop_197        48   1e-06
gma-MIR319m_MI0018678_Glycine_max_miR319m_stem-loop_190                48   1e-06
ptc-MIR319d_MI0002299_Populus_trichocarpa_miR319d_stem-loop_193        48   1e-06
ath-MIR319b_MI0000545_Arabidopsis_thaliana_miR319b_stem-loop_172       46   4e-06
vvi-MIR319b_MI0006548_Vitis_vinifera_miR319b_stem-loop_194             46   4e-06
smo-MIR319_MI0006090_Selaginella_moellendorffii_miR319_stem-loop...    46   4e-06
amg-MIR319_MI0018986_Acacia_mangium_miR319_stem-loop_182               46   4e-06
zma-MIR319a_MI0001813_Zea_mays_miR319a_stem-loop_209                   44   2e-05
zma-MIR319c_MI0001814_Zea_mays_miR319c_stem-loop_216                   44   2e-05
rco-MIR319b_MI0013407_Ricinus_communis_miR319b_stem-loop_179           44   2e-05
aly-MIR319a_MI0014518_Arabidopsis_lyrata_miR319a_stem-loop_221         44   2e-05
tae-MIR319_MI0016453_Triticum_aestivum_miR319_stem-loop_211            44   2e-05
bdi-MIR319_MI0018137_Brachypodium_distachyon_miR319_stem-loop_280      44   2e-05
ptc-MIR319f_MI0002301_Populus_trichocarpa_miR319f_stem-loop_202        42   7e-05
gma-MIR319g_MI0018672_Glycine_max_miR319g_stem-loop_198                42   7e-05
zma-MIR319d_MI0001816_Zea_mays_miR319d_stem-loop_212                   42   7e-05
ptc-MIR319g_MI0002302_Populus_trichocarpa_miR319g_stem-loop_204        42   7e-05
ppt-MIR319d_MI0003499_Physcomitrella_patens_miR319d_stem-loop_170      42   7e-05
bdi-MIR319b_MI0018236_Brachypodium_distachyon_miR319b_stem-loop_190    42   7e-05
ppt-MIR319c_MI0003498_Physcomitrella_patens_miR319c_stem-loop_189      42   7e-05
vun-MIR319b_MI0019567_Vigna_unguiculata_miR319b_stem-loop_223          42   7e-05
ppt-MIR319e_MI0005665_Physcomitrella_patens_miR319e_stem-loop_174      42   7e-05
vvi-MIR319g_MI0006551_Vitis_vinifera_miR319g_stem-loop_222             40   3e-04
pvu-MIR319c_MI0010705_Phaseolus_vulgaris_miR319c_stem-loop_734         40   3e-04
ppt-MIR319b_MI0003497_Physcomitrella_patens_miR319b_stem-loop_160      40   3e-04
pta-MIR159c_MI0005780_Pinus_taeda_miR159c_stem-loop_85                 40   3e-04
mdm-MIR319c_MI0023162_176                                              40   3e-04
ppt-MIR319a_MI0003496_Physcomitrella_patens_miR319a_stem-loop_169      40   3e-04

>mdm-MIR319b_MI0023072_193
          Length = 193

 Score =  383 bits (193), Expect = e-107
 Identities = 193/193 (100%)
 Strand = Plus / Plus

                                                                       
Query: 10  gcagtggtgaagagagctttcttcagtccactcatgggtggcggtaggatttaattagct 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gcagtggtgaagagagctttcttcagtccactcatgggtggcggtaggatttaattagct 60

                                                                       
Query: 70  gccgagtcattcatccaaatactgggttattagtaggatgacatccagtaaatgtgtgaa 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gccgagtcattcatccaaatactgggttattagtaggatgacatccagtaaatgtgtgaa 120

                                                                       
Query: 130 tgaagcgggagacaaattggatcttaagcttcctgtacttggactgaagggagctccctt 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaagcgggagacaaattggatcttaagcttcctgtacttggactgaagggagctccctt 180

                        
Query: 190 aattaattacttc 202
           |||||||||||||
Sbjct: 181 aattaattacttc 193


>mdm-MIR319a_MI0023071_195
          Length = 195

 Score =  301 bits (152), Expect = 4e-83
 Identities = 185/195 (94%), Gaps = 2/195 (1%)
 Strand = Plus / Plus

                                                                       
Query: 10  gcagtggtgaagagagctttcttcagtccactcatgggtggcggtaggatttaattagct 69
           ||||||||||||||||||||||| |||||| ||||||||||||  |||||||||||||||
Sbjct: 1   gcagtggtgaagagagctttctttagtccattcatgggtggcgacaggatttaattagct 60

                                                                       
Query: 70  gccgagtcattcatccaaatactgggttattagt--aggatgacatccagtaaatgtgtg 127
           |||||||||||||||||||||||||||||||||   |||| |||| ||||||||||||||
Sbjct: 61  gccgagtcattcatccaaatactgggttattagctcaggacgacacccagtaaatgtgtg 120

                                                                       
Query: 128 aatgaagcgggagacaaattggatcttaagcttcctgtacttggactgaagggagctccc 187
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 121 aatgaagcgggagacaaattggatcttgagcttcctgtacttggactgaagggagctccc 180

                          
Query: 188 ttaattaattacttc 202
           |||||||||||||||
Sbjct: 181 ttaattaattacttc 195


>vvi-MIR319c_MI0006549_Vitis_vinifera_miR319c_stem-loop_182
          Length = 182

 Score =  194 bits (98), Expect = 7e-51
 Identities = 155/173 (89%), Gaps = 7/173 (4%)
 Strand = Plus / Plus

                                                                       
Query: 17  tgaagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagt 76
           ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
Sbjct: 7   tgaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgact 66

                                                                       
Query: 77  cattcatccaaatactgggttattagtaggatgacatccagtaaatgtgtgaatgaagcg 136
           ||||||||||||||||| ||||     ||||  ||  ||||||||||  ||||||| |||
Sbjct: 67  cattcatccaaatactgtgtta-----aggactac--ccagtaaatgattgaatgatgcg 119

                                                                
Query: 137 ggagacaaattggatcttaagcttcctgtacttggactgaagggagctccctt 189
           ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 120 ggagacaaattggatcttaagctccctgtgcttggactgaagggagctccctt 172


>ptc-MIR319a_MI0002296_Populus_trichocarpa_miR319a_stem-loop_188
          Length = 188

 Score =  190 bits (96), Expect = 1e-49
 Identities = 156/174 (89%), Gaps = 4/174 (2%)
 Strand = Plus / Plus

                                                                       
Query: 19  aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtca 78
           ||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||
Sbjct: 9   aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 68

                                                                       
Query: 79  ttcatccaaatactgggttattagtaggatgacat---ccagtaaatgtgtgaatgaagc 135
           ||||||||||||||| ||||  || |  | || ||   |||||||||| |||||||| ||
Sbjct: 69  ttcatccaaatactgagtta-aaggacaaggagattacccagtaaatgagtgaatgatgc 127

                                                                 
Query: 136 gggagacaaattggatcttaagcttcctgtacttggactgaagggagctccctt 189
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 128 gggagacaaattgaatcctaagcttcctgtacttggactgaagggagctccctt 181


>rco-MIR319a_MI0013406_Ricinus_communis_miR319a_stem-loop_211
          Length = 211

 Score =  143 bits (72), Expect = 2e-35
 Identities = 78/80 (97%)
 Strand = Plus / Plus

                                                                      
Query: 19 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtca 78
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3  aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 62

                              
Query: 79 ttcatccaaatactgggtta 98
          ||||||||||||||| ||||
Sbjct: 63 ttcatccaaatactgagtta 82



 Score =  127 bits (64), Expect = 1e-30
 Identities = 73/76 (96%)
 Strand = Plus / Plus

                                                                       
Query: 114 ccagtaaatgtgtgaatgaagcgggagacaaattggatcttaagcttcctgtacttggac 173
           |||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 132 ccagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggac 191

                           
Query: 174 tgaagggagctccctt 189
           ||||||||||||||||
Sbjct: 192 tgaagggagctccctt 207


>ctr-MIR319_MI0013303_Citrus_trifoliata_miR319_stem-loop_186
          Length = 186

 Score =  143 bits (72), Expect = 2e-35
 Identities = 144/167 (86%), Gaps = 2/167 (1%)
 Strand = Plus / Plus

                                                                       
Query: 23  gagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtcattca 82
           ||||||||||| ||||||| |||||||||  |||||||||||||||||| || |||||||
Sbjct: 10  gagctttcttcggtccacttatgggtggcaataggatttaattagctgctgactcattca 69

                                                                       
Query: 83  tccaaatactgggttattagtaggat--gacatccagtaaatgtgtgaatgaagcgggag 140
           ||||||||||  || |   || | |   || | |||||||||| |||||||| |||||||
Sbjct: 70  tccaaatacttagtaaagggtcgaaatggatacccagtaaatgagtgaatgatgcgggag 129

                                                          
Query: 141 acaaattggatcttaagcttcctgtacttggactgaagggagctccc 187
           |||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 130 acaaattgaatcttaagcttcctgtgcttggactgaagggagctccc 176


>gma-MIR319a_MI0001782_Glycine_max_miR319a_stem-loop_207
          Length = 207

 Score =  127 bits (64), Expect = 1e-30
 Identities = 146/172 (84%), Gaps = 1/172 (0%)
 Strand = Plus / Plus

                                                                       
Query: 19  aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtca 78
           ||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||| |||
Sbjct: 19  aagagagctttcttcagtccactcatgggtgacagtaagattcaattagctgccgactca 78

                                                                       
Query: 79  ttcatccaaatactgggt-tattagtaggatgacatccagtaaatgtgtgaatgaagcgg 137
           |||||||||||  || || ||   | |  |  | |  ||| | ||| |||||||| ||||
Sbjct: 79  ttcatccaaatgttgagtgtaagcgaataaatatactcagcagatgagtgaatgatgcgg 138

                                                               
Query: 138 gagacaaattggatcttaagcttcctgtacttggactgaagggagctccctt 189
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 139 gagacaaattgaatcttaagtttcctgtacttggactgaagggagctccctt 190


>gma-MIR319b_MI0001783_Glycine_max_miR319b_stem-loop_208
          Length = 208

 Score =  121 bits (61), Expect = 9e-29
 Identities = 147/173 (84%), Gaps = 2/173 (1%)
 Strand = Plus / Plus

                                                                       
Query: 19  aagagagctttcttcagtccactcatgggtggcggtaggattt-aattagctgccgagtc 77
           ||||||||||||||||||||||| ||||||| |  || ||||| ||||||||||||| ||
Sbjct: 19  aagagagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactc 78

                                                                       
Query: 78  attcatccaaatactgggttatta-gtaggatgacatccagtaaatgtgtgaatgaagcg 136
           |||||||||||| ||| || |    | || | || |  ||| ||||| |||||||| |||
Sbjct: 79  attcatccaaatgctgagtgaaagcgaagaaagatactcagcaaatgagtgaatgatgcg 138

                                                                
Query: 137 ggagacaaattggatcttaagcttcctgtacttggactgaagggagctccctt 189
           ||||||||||||  ||||||| |||||||||||||||||||||||||||||||
Sbjct: 139 ggagacaaattgattcttaagtttcctgtacttggactgaagggagctccctt 191


>vun-MIR319a_MI0019574_Vigna_unguiculata_miR319a_stem-loop_207
          Length = 207

 Score =  113 bits (57), Expect = 2e-26
 Identities = 144/172 (83%), Gaps = 7/172 (4%)
 Strand = Plus / Plus

                                                                       
Query: 23  gagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtcattca 82
           |||||||||||||||||||||| |||||| ||| |||| ||||||||||||| |||||||
Sbjct: 21  gagctttcttcagtccactcataggtggcagtaagattcaattagctgccgactcattca 80

                                                                       
Query: 83  tccaaatactgggt-----tattagtaggatgacatccagtaaatgtgtgaatgaagcgg 137
           ||||||| ||| ||     || |  ||  | || |  ||  ||||| |||||||| ||||
Sbjct: 81  tccaaatgctgagtagtgatactctta--aagatactcatcaaatgagtgaatgatgcgg 138

                                                               
Query: 138 gagacaaattggatcttaagcttcctgtacttggactgaagggagctccctt 189
           |||||||||||  ||||||| |||||||||||||||||||||||||||||||
Sbjct: 139 gagacaaattgattcttaagtttcctgtacttggactgaagggagctccctt 190


>gma-MIR319j_MI0018675_Glycine_max_miR319j_stem-loop_179
          Length = 179

 Score =  103 bits (52), Expect = 2e-23
 Identities = 144/172 (83%), Gaps = 2/172 (1%)
 Strand = Plus / Plus

                                                                       
Query: 19  aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtca 78
           ||||||||| ||||||| |||||||| ||||    ||||||||||||||||||||| |||
Sbjct: 5   aagagagctctcttcagcccactcataggtgataataggatttaattagctgccgactca 64

                                                                       
Query: 79  ttcatccaaatactgggtta-ttagtaggatgacatccagtaaatgtgtgaatgaagcgg 137
           ||||| || || ||| || | ||| | | || | |  ||||||||| ||||||||  |||
Sbjct: 65  ttcatacacatgctgagtgaattaat-gaataatactcagtaaatgagtgaatgatacgg 123

                                                               
Query: 138 gagacaaattggatcttaagcttcctgtacttggactgaagggagctccctt 189
           ||||||||||| |||||| | || ||||||||||||||||||||||||||||
Sbjct: 124 gagacaaattgaatcttatgttttctgtacttggactgaagggagctccctt 175


>mtr-MIR319b_MI0005596_Medicago_truncatula_miR319b_stem-loop_180
          Length = 180

 Score =  101 bits (51), Expect = 8e-23
 Identities = 66/71 (92%)
 Strand = Plus / Plus

                                                                       
Query: 119 aaatgtgtgaatgaagcgggagacaaattggatcttaagcttcctgtacttggactgaag 178
           ||||| |||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 107 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 166

                      
Query: 179 ggagctccctt 189
           |||||||||||
Sbjct: 167 ggagctccctt 177


>ptc-MIR319b_MI0002297_Populus_trichocarpa_miR319b_stem-loop_185
          Length = 185

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 114/134 (85%), Gaps = 3/134 (2%)
 Strand = Plus / Plus

                                                                       
Query: 57  gatttaattagctgccgagtcattcatccaaatactgggttattag-taggatgacatcc 115
           ||||||||||| | |||| |||||||||||||||||| ||||| || || ||| ||  ||
Sbjct: 47  gatttaattagttaccgactcattcatccaaatactgagttatgagctaagattac--cc 104

                                                                       
Query: 116 agtaaatgtgtgaatgaagcgggagacaaattggatcttaagcttcctgtacttggactg 175
           ||||||||  ||| ||| ||||||||||||||  ||||||| |||||| |  ||||||||
Sbjct: 105 agtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactg 164

                         
Query: 176 aagggagctccctt 189
           ||||||||||||||
Sbjct: 165 aagggagctccctt 178


>aqc-MIR319_MI0012091_Aquilegia_caerulea_miR319_stem-loop_177
          Length = 177

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 64/72 (88%)
 Strand = Plus / Plus

                                                                       
Query: 117 gtaaatgtgtgaatgaagcgggagacaaattggatcttaagcttcctgtacttggactga 176
           |||||||  |||||||  |||||||  |||||||||||| ||||| ||||||||||||||
Sbjct: 104 gtaaatgaatgaatgatccgggagattaattggatcttatgcttcttgtacttggactga 163

                       
Query: 177 agggagctccct 188
           ||||||||||||
Sbjct: 164 agggagctccct 175



 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                      
Query: 20 agagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtcat 79
          |||||||| |||||||||||||||| ||| |  ||  |||| |||| |||||||| ||||
Sbjct: 1  agagagctctcttcagtccactcataggtagtagtcagattcaatttgctgccgactcat 60

                 
Query: 80 tcatcca 86
          |||||||
Sbjct: 61 tcatcca 67


>sly-MIR319_MI0009978_Solanum_lycopersicum_miR319_stem-loop_168
          Length = 168

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 58/63 (92%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                       
Query: 125 gtgaatgaagcgggag-acaaattggatcttaagcttcctgtacttggactgaagggagc 183
           |||||||||||||||| |||| |||  |||| ||||||||||||||||||||||||||||
Sbjct: 106 gtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttggactgaagggagc 165

              
Query: 184 tcc 186
           |||
Sbjct: 166 tcc 168



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                      
Query: 28 ttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtcattcatccaa 87
          ||||| ||||||| ||||||   || |||| || |||| |||||||| ||||||||||||
Sbjct: 5  ttctttagtccacacatggggaacgatagggttcaatttgctgccgactcattcatccaa 64

            
Query: 88 at 89
          ||
Sbjct: 65 at 66


>osa-MIR319b_MI0001099_Oryza_sativa_miR319b_stem-loop_197
          Length = 197

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                      
Query: 18 gaagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtc 77
          ||||||||| | |||||||||||||||||| || | |||| |  ||||||||||||| ||
Sbjct: 9  gaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactc 68

               
Query: 78 attca 82
          |||||
Sbjct: 69 attca 73


>ptc-MIR319c_MI0002298_Populus_trichocarpa_miR319c_stem-loop_196
          Length = 196

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 19 aagagagctttcttcagtccactcatgg 46
          ||||||||||||||||||||||||||||
Sbjct: 9  aagagagctttcttcagtccactcatgg 36



 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 61/71 (85%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                       
Query: 120 aatgtgtgaatgaagcgggagacaaattggatcttaagcttc-ctgtacttggactgaag 178
           ||||||||||||| |||||||| |||||  ||| |   |||| |||| ||||||||||||
Sbjct: 119 aatgtgtgaatgatgcgggagataaatttcatccttttcttctctgtgcttggactgaag 178

                      
Query: 179 ggagctccctt 189
           |||||||||||
Sbjct: 179 ggagctccctt 189


>rco-MIR319c_MI0013408_Ricinus_communis_miR319c_stem-loop_188
          Length = 188

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 61/71 (85%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                      
Query: 19 aagagagctttcttcagtccactcatgggtggcggtaggattt-aattagctgccgagtc 77
          ||||||||| ||||||||||||||||||| ||  | ||| ||| ||||| ||||||| ||
Sbjct: 3  aagagagctctcttcagtccactcatgggcgggcgaaggttttgaattatctgccgactc 62

                     
Query: 78 attcatccaaa 88
          |||||| ||||
Sbjct: 63 attcattcaaa 73



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 162 ctgtacttggactgaagggagctccctt 189
           |||| |||||||||||||||||||||||
Sbjct: 157 ctgtgcttggactgaagggagctccctt 184


>gma-MIR319e_MI0017843_Glycine_max_miR319e_stem-loop_190
          Length = 190

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 17 tgaagagagctttcttcagtccactcatgg 46
          |||||||||||| |||||||||||||||||
Sbjct: 6  tgaagagagcttccttcagtccactcatgg 35



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 162 ctgtacttggactgaagggagctccct 188
           |||| ||||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctccct 182


>gma-MIR319h_MI0018673_Glycine_max_miR319h_stem-loop_186
          Length = 186

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 17 tgaagagagctttcttcagtccactcatgg 46
          |||||||||||| |||||||||||||||||
Sbjct: 4  tgaagagagcttccttcagtccactcatgg 33



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 167 cttggactgaagggagctccct 188
           ||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180


>mtr-MIR319_MI0001751_Medicago_truncatula_miR319_stem-loop_207
          Length = 207

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 17 tgaagagagctttcttcagtccactcatgg 46
          |||||||||||| |||||||||||||||||
Sbjct: 16 tgaagagagcttccttcagtccactcatgg 45



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 167 cttggactgaagggagctccctt 189
           |||||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctccctt 190


>osa-MIR319a_MI0001098_Oryza_sativa_miR319a_stem-loop_191
          Length = 191

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                      
Query: 18 gaagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtc 77
          |||||||||| ||||||||||||||   | |||| ||||| ||| |||||||||||| ||
Sbjct: 8  gaagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatc 67

            
Query: 78 at 79
          ||
Sbjct: 68 at 69


>sbi-MIR319_MI0001573_Sorghum_bicolor_miR319_stem-loop_249
          Length = 249

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                      
Query: 18 gaagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtc 77
          ||||||||| | |||||||||||||| ||| || | |||| |  ||||||||||||| ||
Sbjct: 31 gaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactc 90

               
Query: 78 attca 82
          |||||
Sbjct: 91 attca 95


>zma-MIR319b_MI0001815_Zea_mays_miR319b_stem-loop_213
          Length = 213

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                      
Query: 18 gaagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtc 77
          ||||||||| | |||||||||||||| ||| || | |||| |  ||||||||||||| ||
Sbjct: 19 gaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactc 78

               
Query: 78 attca 82
          |||||
Sbjct: 79 attca 83


>aly-MIR319b_MI0014519_Arabidopsis_lyrata_miR319b_stem-loop_246
          Length = 246

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 18 gaagagagctttcttcagtccactcatgg 46
          |||||||||||||||| ||||||||||||
Sbjct: 38 gaagagagctttcttcggtccactcatgg 66



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 167 cttggactgaagggagctccct 188
           ||||||||||||||||||||||
Sbjct: 190 cttggactgaagggagctccct 211


>ath-MIR319a_MI0000544_Arabidopsis_thaliana_miR319a_stem-loop_176
          Length = 176

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                      
Query: 20 agagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtcat 79
          ||||||||| ||| |||||| |||  ||| | | || |||| |||||||| |||| ||||
Sbjct: 3  agagagcttccttgagtccattcacaggtcgtgatatgattcaattagcttccgactcat 62

                      
Query: 80 tcatccaaatac 91
          ||||||||||||
Sbjct: 63 tcatccaaatac 74



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 168 ttggactgaagggagctccct 188
           |||||||||||||||||||||
Sbjct: 154 ttggactgaagggagctccct 174


>gma-MIR319k_MI0018676_Glycine_max_miR319k_stem-loop_186
          Length = 186

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 19 aagagagctttcttcagtccactcatgg 46
          |||||||||| |||||||||||||||||
Sbjct: 6  aagagagcttccttcagtccactcatgg 33



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 167 cttggactgaagggagctccctt 189
           |||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccctt 181


>vvi-MIR319f_MI0006550_Vitis_vinifera_miR319f_stem-loop_193
          Length = 193

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 19 aagagagctttcttcagtccactcatgg 46
          |||||||||| |||||||||||||||||
Sbjct: 9  aagagagcttccttcagtccactcatgg 36



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 162 ctgtacttggactgaagggagctccctt 189
           |||| |||||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctccctt 183


>aau-MIR319_MI0018982_Acacia_auriculiformis_miR319_stem-loop_197
          Length = 197

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 19 aagagagctttcttcagtccactcatgg 46
          |||||||||| |||||||||||||||||
Sbjct: 9  aagagagcttccttcagtccactcatgg 36



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 167 cttggactgaagggagctccctt 189
           |||||||||||||||||||||||
Sbjct: 167 cttggactgaagggagctccctt 189


>gma-MIR319m_MI0018678_Glycine_max_miR319m_stem-loop_190
          Length = 190

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 19 aagagagctttcttcagtccactcatgg 46
          |||||||||| |||||||||||||||||
Sbjct: 8  aagagagcttccttcagtccactcatgg 35



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 162 ctgtacttggactgaagggagctccctt 189
           |||| |||||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctccctt 183


>ptc-MIR319d_MI0002299_Populus_trichocarpa_miR319d_stem-loop_193
          Length = 193

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 162 ctgtacttggactgaagggagctccctt 189
           |||| |||||||||||||||||||||||
Sbjct: 159 ctgtgcttggactgaagggagctccctt 186



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 22 agagctttcttcagtccactcatgg 46
          ||||||| |||||||||||||||||
Sbjct: 12 agagcttccttcagtccactcatgg 36


>ath-MIR319b_MI0000545_Arabidopsis_thaliana_miR319b_stem-loop_172
          Length = 172

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 20 agagagctttcttcagtccactcatgg 46
          |||||||||||||| ||||||||||||
Sbjct: 1  agagagctttcttcggtccactcatgg 27



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 167 cttggactgaagggagctccct 188
           ||||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctccct 172


>vvi-MIR319b_MI0006548_Vitis_vinifera_miR319b_stem-loop_194
          Length = 194

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 167 cttggactgaagggagctccctt 189
           |||||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctccctt 184


>smo-MIR319_MI0006090_Selaginella_moellendorffii_miR319_stem-
           loop_215
          Length = 215

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 167 cttggactgaagggagctccctt 189
           |||||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctccctt 207


>amg-MIR319_MI0018986_Acacia_mangium_miR319_stem-loop_182
          Length = 182

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 167 cttggactgaagggagctccctt 189
           |||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccctt 181



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 23 gagctttcttcagtccactcatgg 46
          |||||| |||||||||||||||||
Sbjct: 4  gagcttccttcagtccactcatgg 27


>zma-MIR319a_MI0001813_Zea_mays_miR319a_stem-loop_209
          Length = 209

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                      
Query: 18 gaagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtc 77
          |||||||||| ||||||||||||||     |||| ||||| ||| |||||||||||| ||
Sbjct: 18 gaagagagctctcttcagtccactctgaaatggctgtagggtttcattagctgccgactc 77

            
Query: 78 at 79
          ||
Sbjct: 78 at 79


>zma-MIR319c_MI0001814_Zea_mays_miR319c_stem-loop_216
          Length = 216

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                      
Query: 18 gaagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtc 77
          |||||||||| ||||||||||||||     |||| ||||| ||| |||||||||||| ||
Sbjct: 18 gaagagagctctcttcagtccactctaaaatggctgtagggtttcattagctgccgactc 77

            
Query: 78 at 79
          ||
Sbjct: 78 at 79


>rco-MIR319b_MI0013407_Ricinus_communis_miR319b_stem-loop_179
          Length = 179

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 167 cttggactgaagggagctccct 188
           ||||||||||||||||||||||
Sbjct: 153 cttggactgaagggagctccct 174


>aly-MIR319a_MI0014518_Arabidopsis_lyrata_miR319a_stem-loop_221
          Length = 221

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 62 aattagctgccgagtcattcatccaaatac 91
          |||||||| |||| ||||||||||||||||
Sbjct: 68 aattagcttccgactcattcatccaaatac 97



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 168 ttggactgaagggagctccct 188
           |||||||||||||||||||||
Sbjct: 177 ttggactgaagggagctccct 197


>tae-MIR319_MI0016453_Triticum_aestivum_miR319_stem-loop_211
          Length = 211

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 167 cttggactgaagggagctccct 188
           ||||||||||||||||||||||
Sbjct: 183 cttggactgaagggagctccct 204


>bdi-MIR319_MI0018137_Brachypodium_distachyon_miR319_stem-loop_280
          Length = 280

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 167 cttggactgaagggagctccct 188
           ||||||||||||||||||||||
Sbjct: 225 cttggactgaagggagctccct 246


>ptc-MIR319f_MI0002301_Populus_trichocarpa_miR319f_stem-loop_202
          Length = 202

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 162 ctgtacttggactgaagggagctcc 186
           |||| ||||||||||||||||||||
Sbjct: 168 ctgtgcttggactgaagggagctcc 192


>gma-MIR319g_MI0018672_Glycine_max_miR319g_stem-loop_198
          Length = 198

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 162 ctgtacttggactgaagggagctcc 186
           |||| ||||||||||||||||||||
Sbjct: 158 ctgtgcttggactgaagggagctcc 182


>zma-MIR319d_MI0001816_Zea_mays_miR319d_stem-loop_212
          Length = 212

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                      
Query: 18 gaagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtc 77
          ||||||||| | |||||||||||||| ||| || | |||| |   |||||||||||| ||
Sbjct: 18 gaagagagcgtccttcagtccactcaggggcggtgctagggtcggattagctgccgactc 77

               
Query: 78 attca 82
          |||||
Sbjct: 78 attca 82


>ptc-MIR319g_MI0002302_Populus_trichocarpa_miR319g_stem-loop_204
          Length = 204

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 162 ctgtacttggactgaagggagctcc 186
           |||| ||||||||||||||||||||
Sbjct: 170 ctgtgcttggactgaagggagctcc 194


>ppt-MIR319d_MI0003499_Physcomitrella_patens_miR319d_stem-loop_170
          Length = 170

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 167 cttggactgaagggagctccc 187
           |||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctccc 165


>bdi-MIR319b_MI0018236_Brachypodium_distachyon_miR319b_stem-
          loop_190
          Length = 190

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                      
Query: 19 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgagtca 78
          ||||||||| ||||||||||||||   | || | ||||| ||| |||||||||||| |||
Sbjct: 7  aagagagctctcttcagtccactctcagatgactgtagggttttattagctgccgattca 66

           
Query: 79 t 79
          |
Sbjct: 67 t 67


>ppt-MIR319c_MI0003498_Physcomitrella_patens_miR319c_stem-loop_189
          Length = 189

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 167 cttggactgaagggagctccc 187
           |||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctccc 174


>vun-MIR319b_MI0019567_Vigna_unguiculata_miR319b_stem-loop_223
          Length = 223

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 162 ctgtacttggactgaagggagctcc 186
           |||| ||||||||||||||||||||
Sbjct: 181 ctgtgcttggactgaagggagctcc 205


>ppt-MIR319e_MI0005665_Physcomitrella_patens_miR319e_stem-loop_174
          Length = 174

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 167 cttggactgaagggagctccc 187
           |||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctccc 167


>vvi-MIR319g_MI0006551_Vitis_vinifera_miR319g_stem-loop_222
          Length = 222

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 ttggactgaagggagctccc 187
           ||||||||||||||||||||
Sbjct: 192 ttggactgaagggagctccc 211


>pvu-MIR319c_MI0010705_Phaseolus_vulgaris_miR319c_stem-loop_734
          Length = 734

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 409 cttggactgaagggagctcc 428


>ppt-MIR319b_MI0003497_Physcomitrella_patens_miR319b_stem-loop_160
          Length = 160

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 140 cttggactgaagggagctcc 159


>pta-MIR159c_MI0005780_Pinus_taeda_miR159c_stem-loop_85
          Length = 85

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 167 cttggactgaagggagctccctta 190
           |||||| |||||||||||||||||
Sbjct: 49  cttggattgaagggagctccctta 72


>mdm-MIR319c_MI0023162_176
          Length = 176

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 156 cttggactgaagggagctcc 175


>ppt-MIR319a_MI0003496_Physcomitrella_patens_miR319a_stem-loop_169
          Length = 169

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cttggactgaagggagctcc 186
           ||||||||||||||||||||
Sbjct: 148 cttggactgaagggagctcc 167


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.