(212 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR169b_MI0023039_191                                             379   e-106
ptc-MIR169k_MI0002261_Populus_trichocarpa_miR169k_stem-loop_203        58   1e-09
ghb-MIR169a_MI0005646_Gossypium_herbaceum_miR169a_stem-loop_189        56   4e-09
ptc-MIR169m_MI0002263_Populus_trichocarpa_miR169m_stem-loop_119        54   2e-08
mdm-MIR169f_MI0023172_183                                              54   2e-08
ptc-MIR169i_MI0002259_Populus_trichocarpa_miR169i_stem-loop_123        54   2e-08
mdm-MIR169e_MI0023171_183                                              54   2e-08
tcc-MIR169i_MI0017483_Theobroma_cacao_miR169i_stem-loop_115            50   3e-07
sly-MIR169b_MI0008362_Solanum_lycopersicum_miR169b_stem-loop_205       48   1e-06
vvi-MIR169y_MI0006522_Vitis_vinifera_miR169y_stem-loop_248             48   1e-06
mdm-MIR169c_MI0023040_200                                              48   1e-06
mdm-MIR169d_MI0023041_200                                              48   1e-06
aly-MIR169h_MI0014552_Arabidopsis_lyrata_miR169h_stem-loop_205         46   4e-06
ptc-MIR169j_MI0002260_Populus_trichocarpa_miR169j_stem-loop_137        46   4e-06
tcc-MIR169h_MI0017482_Theobroma_cacao_miR169h_stem-loop_139            46   4e-06
ath-MIR169h_MI0000982_Arabidopsis_thaliana_miR169h_stem-loop_190       46   4e-06
ptc-MIR169l_MI0002262_Populus_trichocarpa_miR169l_stem-loop_143        46   4e-06
ath-MIR169k_MI0000985_Arabidopsis_thaliana_miR169k_stem-loop_213       46   4e-06
bna-MIR169h_MI0006464_Brassica_napus_miR169h_stem-loop_176             44   2e-05
ath-MIR169i_MI0000983_Arabidopsis_thaliana_miR169i_stem-loop_206       44   2e-05
ptc-MIR169w_MI0002273_Populus_trichocarpa_miR169w_stem-loop_109        44   2e-05
bna-MIR169g_MI0006463_Brassica_napus_miR169g_stem-loop_168             44   2e-05
ptc-MIR169r_MI0002268_Populus_trichocarpa_miR169r_stem-loop_119        44   2e-05
aly-MIR169k_MI0014555_Arabidopsis_lyrata_miR169k_stem-loop_203         44   2e-05
ptc-MIR169v_MI0002272_Populus_trichocarpa_miR169v_stem-loop_110        44   2e-05
osa-MIR1433_MI0006973_Oryza_sativa_miR1433_stem-loop_129               44   2e-05
bna-MIR169k_MI0006467_Brassica_napus_miR169k_stem-loop_155             44   2e-05
tcc-MIR169j_MI0017484_Theobroma_cacao_miR169j_stem-loop_141            44   2e-05
ath-MIR169m_MI0000987_Arabidopsis_thaliana_miR169m_stem-loop_212       44   2e-05
bdi-MIR169k_MI0018097_Brachypodium_distachyon_miR169k_stem-loop_174    44   2e-05
aly-MIR169i_MI0014553_Arabidopsis_lyrata_miR169i_stem-loop_210         44   2e-05
aly-MIR169m_MI0014557_Arabidopsis_lyrata_miR169m_stem-loop_230         44   2e-05
bna-MIR169d_MI0006460_Brassica_napus_miR169d_stem-loop_220             42   7e-05
bna-MIR169i_MI0006465_Brassica_napus_miR169i_stem-loop_174             42   7e-05
bna-MIR169c_MI0006459_Brassica_napus_miR169c_stem-loop_176             42   7e-05
sbi-MIR169c_MI0001557_Sorghum_bicolor_miR169c_stem-loop_126            42   7e-05
bna-MIR169j_MI0006466_Brassica_napus_miR169j_stem-loop_167             42   7e-05
tcc-MIR169d_MI0017478_Theobroma_cacao_miR169d_stem-loop_152            42   7e-05
sbi-MIR169d_MI0001558_Sorghum_bicolor_miR169d_stem-loop_103            42   7e-05
bna-MIR169f_MI0006462_Brassica_napus_miR169f_stem-loop_201             42   7e-05
bna-MIR169l_MI0006468_Brassica_napus_miR169l_stem-loop_199             42   7e-05
tae-MIR1433_MI0016460_Triticum_aestivum_miR1433_stem-loop_149          42   7e-05
sbi-MIR169o_MI0013253_Sorghum_bicolor_miR169o_stem-loop_103            42   7e-05
bna-MIR169e_MI0006461_Brassica_napus_miR169e_stem-loop_277             42   7e-05
aqc-MIR169a_MI0012081_Aquilegia_caerulea_miR169a_stem-loop_158         40   3e-04
ath-MIR169j_MI0000984_Arabidopsis_thaliana_miR169j_stem-loop_221       40   3e-04
ath-MIR169n_MI0000988_Arabidopsis_thaliana_miR169n_stem-loop_215       40   3e-04
ptc-MIR169ae_MI0002250_Populus_trichocarpa_miR169ae_stem-loop_107      40   3e-04
osa-MIR169j_MI0001125_Oryza_sativa_miR169j_stem-loop_125               40   3e-04
osa-MIR169m_MI0001128_Oryza_sativa_miR169m_stem-loop_138               40   3e-04
sbi-MIR169f_MI0001560_Sorghum_bicolor_miR169f_stem-loop_148            40   3e-04
zma-MIR169i_MI0001830_Zea_mays_miR169i_stem-loop_191                   40   3e-04
osa-MIR169i_MI0001124_Oryza_sativa_miR169i_stem-loop_176               40   3e-04
osa-MIR169h_MI0001123_Oryza_sativa_miR169h_stem-loop_122               40   3e-04
tcc-MIR169g_MI0017481_Theobroma_cacao_miR169g_stem-loop_144            40   3e-04
ptc-MIR169ab_MI0002247_Populus_trichocarpa_miR169ab_stem-loop_107      40   3e-04
zma-MIR169k_MI0001831_Zea_mays_miR169k_stem-loop_133                   40   3e-04

>mdm-MIR169b_MI0023039_191
          Length = 191

 Score =  379 bits (191), Expect = e-106
 Identities = 191/191 (100%)
 Strand = Plus / Plus

                                                                       
Query: 13  ggaagagatgtcaaacatggaagaaggagccttgtttggtagccaaggatgatttgcctg 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggaagagatgtcaaacatggaagaaggagccttgtttggtagccaaggatgatttgcctg 60

                                                                       
Query: 73  cagcctcgatcctaaagagtaaagaggtttattacacgataaaaatcagaaaaaccctag 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cagcctcgatcctaaagagtaaagaggtttattacacgataaaaatcagaaaaaccctag 120

                                                                       
Query: 133 ttgagttctcaggcagtcacgccttggcgacgtgacaagctcttctctctcatgctaggc 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgagttctcaggcagtcacgccttggcgacgtgacaagctcttctctctcatgctaggc 180

                      
Query: 193 tgctctcttcc 203
           |||||||||||
Sbjct: 181 tgctctcttcc 191


>ptc-MIR169k_MI0002261_Populus_trichocarpa_miR169k_stem-loop_203
          Length = 203

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 43 cttgtttggtagccaaggatgatttgcctgcagcctc 79
          |||||||||||||||||||||| ||||||| ||||||
Sbjct: 2  cttgtttggtagccaaggatgacttgcctgtagcctc 38


>ghb-MIR169a_MI0005646_Gossypium_herbaceum_miR169a_stem-loop_189
          Length = 189

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 43 cttgtttggtagccaaggatgatttgcctgca 74
          |||||||||||||||||||||| |||||||||
Sbjct: 41 cttgtttggtagccaaggatgacttgcctgca 72


>ptc-MIR169m_MI0002263_Populus_trichocarpa_miR169m_stem-loop_119
          Length = 119

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 43 cttgtttggtagccaaggatgatttgcctgc 73
          |||||||||||||||||||||| ||||||||
Sbjct: 2  cttgtttggtagccaaggatgacttgcctgc 32


>mdm-MIR169f_MI0023172_183
          Length = 183

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 39 gagccttgtttggtagccaaggatgatttgcctgc 73
          |||| ||||||||||||||||||||| ||||||||
Sbjct: 22 gagcgttgtttggtagccaaggatgacttgcctgc 56


>ptc-MIR169i_MI0002259_Populus_trichocarpa_miR169i_stem-loop_123
          Length = 123

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 43 cttgtttggtagccaaggatgatttgcctgc 73
          |||||||||||||||||||||| ||||||||
Sbjct: 2  cttgtttggtagccaaggatgacttgcctgc 32


>mdm-MIR169e_MI0023171_183
          Length = 183

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 39 gagccttgtttggtagccaaggatgatttgcctgc 73
          |||| ||||||||||||||||||||| ||||||||
Sbjct: 22 gagcgttgtttggtagccaaggatgacttgcctgc 56


>tcc-MIR169i_MI0017483_Theobroma_cacao_miR169i_stem-loop_115
          Length = 115

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 45 tgtttggtagccaaggatgatttgcctgc 73
          |||||||||||||||||||| ||||||||
Sbjct: 14 tgtttggtagccaaggatgagttgcctgc 42


>sly-MIR169b_MI0008362_Solanum_lycopersicum_miR169b_stem-loop_205
          Length = 205

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 47  tttggtagccaaggatgatttgcctgca 74
           |||||||||||||||||| |||||||||
Sbjct: 166 tttggtagccaaggatgacttgcctgca 193


>vvi-MIR169y_MI0006522_Vitis_vinifera_miR169y_stem-loop_248
          Length = 248

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 44 ttgtttggtagccaaggatgatttgcctgcagcctc 79
          |||||||||||| |||||||| |||||| |||||||
Sbjct: 3  ttgtttggtagcgaaggatgacttgcctacagcctc 38


>mdm-MIR169c_MI0023040_200
          Length = 200

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 39 gagccttgtttggtagccaaggatgatttgcc 70
          |||| ||||||||||||||||||||| |||||
Sbjct: 32 gagcgttgtttggtagccaaggatgacttgcc 63


>mdm-MIR169d_MI0023041_200
          Length = 200

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 39 gagccttgtttggtagccaaggatgatttgcc 70
          |||| ||||||||||||||||||||| |||||
Sbjct: 32 gagcgttgtttggtagccaaggatgacttgcc 63


>aly-MIR169h_MI0014552_Arabidopsis_lyrata_miR169h_stem-loop_205
          Length = 205

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 43 cttgtttggtagccaaggatgatttgcctgc 73
          ||||| |||||||||||||||| ||||||||
Sbjct: 44 cttgtgtggtagccaaggatgacttgcctgc 74


>ptc-MIR169j_MI0002260_Populus_trichocarpa_miR169j_stem-loop_137
          Length = 137

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 43 cttgtttggtagccaaggatgatttgcctgc 73
          |||||||| ||||||||||||| ||||||||
Sbjct: 2  cttgtttgatagccaaggatgacttgcctgc 32


>tcc-MIR169h_MI0017482_Theobroma_cacao_miR169h_stem-loop_139
          Length = 139

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 48 ttggtagccaaggatgatttgcctgca 74
          ||||||||||||||||| |||||||||
Sbjct: 17 ttggtagccaaggatgacttgcctgca 43


>ath-MIR169h_MI0000982_Arabidopsis_thaliana_miR169h_stem-loop_190
          Length = 190

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 43 cttgtttggtagccaaggatgatttgcctgc 73
          ||||| |||||||||||||||| ||||||||
Sbjct: 37 cttgtgtggtagccaaggatgacttgcctgc 67


>ptc-MIR169l_MI0002262_Populus_trichocarpa_miR169l_stem-loop_143
          Length = 143

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 43 cttgtttggtagccaaggatgatttgcctgc 73
          |||||||| ||||||||||||| ||||||||
Sbjct: 2  cttgtttgatagccaaggatgacttgcctgc 32


>ath-MIR169k_MI0000985_Arabidopsis_thaliana_miR169k_stem-loop_213
          Length = 213

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 47 tttggtagccaaggatgatttgcctgc 73
          |||||||||||||||||| ||||||||
Sbjct: 38 tttggtagccaaggatgacttgcctgc 64


>bna-MIR169h_MI0006464_Brassica_napus_miR169h_stem-loop_176
          Length = 176

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 44 ttgtttggtagccaaggatgatttgcctgc 73
          |||| |||||||||||||||| ||||||||
Sbjct: 29 ttgtgtggtagccaaggatgacttgcctgc 58


>ath-MIR169i_MI0000983_Arabidopsis_thaliana_miR169i_stem-loop_206
          Length = 206

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 47 tttggtagccaaggatgatttgcctg 72
          |||||||||||||||||| |||||||
Sbjct: 35 tttggtagccaaggatgacttgcctg 60


>ptc-MIR169w_MI0002273_Populus_trichocarpa_miR169w_stem-loop_109
          Length = 109

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 45 tgtttggtagccaaggatgatttgcc 70
          |||||||||||||||||||| |||||
Sbjct: 3  tgtttggtagccaaggatgacttgcc 28


>bna-MIR169g_MI0006463_Brassica_napus_miR169g_stem-loop_168
          Length = 168

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 44 ttgtttggtagccaaggatgatttgcctgc 73
          |||| |||||||||||||||| ||||||||
Sbjct: 29 ttgtgtggtagccaaggatgacttgcctgc 58


>ptc-MIR169r_MI0002268_Populus_trichocarpa_miR169r_stem-loop_119
          Length = 119

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 46 gtttggtagccaaggatgatttgcct 71
          ||||||||||||||||||| ||||||
Sbjct: 5  gtttggtagccaaggatgacttgcct 30


>aly-MIR169k_MI0014555_Arabidopsis_lyrata_miR169k_stem-loop_203
          Length = 203

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 47 tttggtagccaaggatgatttgcctg 72
          |||||||||||||||||| |||||||
Sbjct: 35 tttggtagccaaggatgacttgcctg 60


>ptc-MIR169v_MI0002272_Populus_trichocarpa_miR169v_stem-loop_110
          Length = 110

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 45 tgtttggtagccaaggatgatttgcc 70
          |||||||||||||||||||| |||||
Sbjct: 3  tgtttggtagccaaggatgacttgcc 28


>osa-MIR1433_MI0006973_Oryza_sativa_miR1433_stem-loop_129
          Length = 129

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 52 tagccaaggatgatttgcctgcagcc 77
          ||||||||||||||||||||| ||||
Sbjct: 14 tagccaaggatgatttgcctgtagcc 39


>bna-MIR169k_MI0006467_Brassica_napus_miR169k_stem-loop_155
          Length = 155

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 44 ttgtttggtagccaaggatgatttgcctgc 73
          |||| |||||||||||||||| ||||||||
Sbjct: 26 ttgtgtggtagccaaggatgacttgcctgc 55


>tcc-MIR169j_MI0017484_Theobroma_cacao_miR169j_stem-loop_141
          Length = 141

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 43 cttgtttggtagccaaggatgatttgcctg 72
          |||||||| ||||||||||||| |||||||
Sbjct: 12 cttgtttgatagccaaggatgacttgcctg 41


>ath-MIR169m_MI0000987_Arabidopsis_thaliana_miR169m_stem-loop_212
          Length = 212

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 47 tttggtagccaaggatgatttgcctg 72
          |||||||||||||||||| |||||||
Sbjct: 37 tttggtagccaaggatgacttgcctg 62


>bdi-MIR169k_MI0018097_Brachypodium_distachyon_miR169k_stem-
          loop_174
          Length = 174

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 47 tttggtagccaaggatgatttgcctg 72
          |||| |||||||||||||||||||||
Sbjct: 27 tttgatagccaaggatgatttgcctg 52


>aly-MIR169i_MI0014553_Arabidopsis_lyrata_miR169i_stem-loop_210
          Length = 210

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 47 tttggtagccaaggatgatttgcctg 72
          |||||||||||||||||| |||||||
Sbjct: 35 tttggtagccaaggatgacttgcctg 60


>aly-MIR169m_MI0014557_Arabidopsis_lyrata_miR169m_stem-loop_230
          Length = 230

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 47 tttggtagccaaggatgatttgcctg 72
          |||||||||||||||||| |||||||
Sbjct: 45 tttggtagccaaggatgacttgcctg 70


>bna-MIR169d_MI0006460_Brassica_napus_miR169d_stem-loop_220
          Length = 220

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 47 tttggtagccaaggatgatttgcct 71
          |||||||||||||||||| ||||||
Sbjct: 35 tttggtagccaaggatgacttgcct 59


>bna-MIR169i_MI0006465_Brassica_napus_miR169i_stem-loop_174
          Length = 174

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 45 tgtttggtagccaaggatgatttgcctgc 73
          ||||| |||||||||||||| ||||||||
Sbjct: 8  tgtttagtagccaaggatgacttgcctgc 36


>bna-MIR169c_MI0006459_Brassica_napus_miR169c_stem-loop_176
          Length = 176

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 47 tttggtagccaaggatgatttgcct 71
          |||||||||||||||||| ||||||
Sbjct: 21 tttggtagccaaggatgacttgcct 45


>sbi-MIR169c_MI0001557_Sorghum_bicolor_miR169c_stem-loop_126
          Length = 126

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 47 tttggtagccaaggatgatttgcct 71
          |||||||||||||||||| ||||||
Sbjct: 16 tttggtagccaaggatgacttgcct 40


>bna-MIR169j_MI0006466_Brassica_napus_miR169j_stem-loop_167
          Length = 167

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 45 tgtttggtagccaaggatgatttgcctgc 73
          ||||| |||||||||||||| ||||||||
Sbjct: 2  tgtttagtagccaaggatgacttgcctgc 30


>tcc-MIR169d_MI0017478_Theobroma_cacao_miR169d_stem-loop_152
          Length = 152

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 43 cttgtttggtagccaaggatgatttgcct 71
          |||||| ||||||||||||||| ||||||
Sbjct: 12 cttgttgggtagccaaggatgacttgcct 40


>sbi-MIR169d_MI0001558_Sorghum_bicolor_miR169d_stem-loop_103
          Length = 103

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 47 tttggtagccaaggatgatttgcct 71
          |||||||||||||||||| ||||||
Sbjct: 16 tttggtagccaaggatgacttgcct 40


>bna-MIR169f_MI0006462_Brassica_napus_miR169f_stem-loop_201
          Length = 201

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 47 tttggtagccaaggatgatttgcct 71
          |||||||||||||||||| ||||||
Sbjct: 26 tttggtagccaaggatgacttgcct 50


>bna-MIR169l_MI0006468_Brassica_napus_miR169l_stem-loop_199
          Length = 199

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 45 tgtttggtagccaaggatgatttgcctgc 73
          ||||| |||||||||||||| ||||||||
Sbjct: 18 tgtttagtagccaaggatgacttgcctgc 46


>tae-MIR1433_MI0016460_Triticum_aestivum_miR1433_stem-loop_149
          Length = 149

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 52 tagccaaggatgatttgcctg 72
          |||||||||||||||||||||
Sbjct: 24 tagccaaggatgatttgcctg 44


>sbi-MIR169o_MI0013253_Sorghum_bicolor_miR169o_stem-loop_103
          Length = 103

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 52 tagccaaggatgatttgcctg 72
          |||||||||||||||||||||
Sbjct: 2  tagccaaggatgatttgcctg 22


>bna-MIR169e_MI0006461_Brassica_napus_miR169e_stem-loop_277
          Length = 277

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 47  tttggtagccaaggatgatttgcct 71
           |||||||||||||||||| ||||||
Sbjct: 247 tttggtagccaaggatgacttgcct 271


>aqc-MIR169a_MI0012081_Aquilegia_caerulea_miR169a_stem-loop_158
          Length = 158

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                      
Query: 28 catggaagaaggagccttgtttggtagccaaggatgatttgcct 71
          |||| ||| ||||| | ||||| |||||||||||||| ||||||
Sbjct: 2  catgaaagtaggaggcgtgtttagtagccaaggatgacttgcct 45


>ath-MIR169j_MI0000984_Arabidopsis_thaliana_miR169j_stem-loop_221
          Length = 221

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 45 tgtttggtagccaaggatgatttgcctg 72
          ||||| |||||||||||||| |||||||
Sbjct: 44 tgtttagtagccaaggatgacttgcctg 71


>ath-MIR169n_MI0000988_Arabidopsis_thaliana_miR169n_stem-loop_215
          Length = 215

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 45 tgtttggtagccaaggatgatttgcctg 72
          ||||| |||||||||||||| |||||||
Sbjct: 38 tgtttagtagccaaggatgacttgcctg 65


>ptc-MIR169ae_MI0002250_Populus_trichocarpa_miR169ae_stem-loop_107
          Length = 107

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 43 cttgtttggtagccaaggatgatttgcc 70
          ||||||||||||||||||| || |||||
Sbjct: 1  cttgtttggtagccaaggacgacttgcc 28


>osa-MIR169j_MI0001125_Oryza_sativa_miR169j_stem-loop_125
          Length = 125

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 49 tggtagccaaggatgatttgcctg 72
          |||||||||||||||| |||||||
Sbjct: 8  tggtagccaaggatgacttgcctg 31


>osa-MIR169m_MI0001128_Oryza_sativa_miR169m_stem-loop_138
          Length = 138

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 49 tggtagccaaggatgatttgcctg 72
          |||||||||||||||| |||||||
Sbjct: 8  tggtagccaaggatgacttgcctg 31


>sbi-MIR169f_MI0001560_Sorghum_bicolor_miR169f_stem-loop_148
          Length = 148

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 49 tggtagccaaggatgatttgcctg 72
          |||||||||||||||| |||||||
Sbjct: 18 tggtagccaaggatgacttgcctg 41


>zma-MIR169i_MI0001830_Zea_mays_miR169i_stem-loop_191
          Length = 191

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 49 tggtagccaaggatgatttgcctg 72
          |||||||||||||||| |||||||
Sbjct: 18 tggtagccaaggatgacttgcctg 41


>osa-MIR169i_MI0001124_Oryza_sativa_miR169i_stem-loop_176
          Length = 176

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 49 tggtagccaaggatgatttgcctg 72
          |||||||||||||||| |||||||
Sbjct: 41 tggtagccaaggatgacttgcctg 64


>osa-MIR169h_MI0001123_Oryza_sativa_miR169h_stem-loop_122
          Length = 122

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 49 tggtagccaaggatgatttgcctg 72
          |||||||||||||||| |||||||
Sbjct: 8  tggtagccaaggatgacttgcctg 31


>tcc-MIR169g_MI0017481_Theobroma_cacao_miR169g_stem-loop_144
          Length = 144

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 44 ttgtttggtagccaaggatgatttgcct 71
          |||||||||||||| |||||| ||||||
Sbjct: 13 ttgtttggtagccagggatgacttgcct 40


>ptc-MIR169ab_MI0002247_Populus_trichocarpa_miR169ab_stem-loop_107
          Length = 107

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 43 cttgtttggtagccaaggatgatttgcc 70
          ||||||||||||||||||| || |||||
Sbjct: 1  cttgtttggtagccaaggacgacttgcc 28


>zma-MIR169k_MI0001831_Zea_mays_miR169k_stem-loop_133
          Length = 133

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 49 tggtagccaaggatgatttgcctg 72
          |||||||||||||||| |||||||
Sbjct: 18 tggtagccaaggatgacttgcctg 41


  Database: hairpin_length.fa
    Posted date:  Aug 21, 2012  8:44 PM
  Number of letters in database: 1,887,117
  Number of sequences in database:  18,432
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 18432
Number of Hits to DB: 243,882
Number of extensions: 72137
Number of successful extensions: 72137
Number of sequences better than 1.0e-03: 2994
Number of HSP's gapped: 71811
Number of HSP's successfully gapped: 12828
Length of database: 1,887,117
X1: 9 (17.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 9 (18.3 bits)
S2: 18 (36.2 bits)