(125 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR403b_MI0023116_114                                             226   1e-60
mdm-MIR403a_MI0023115_115                                             135   3e-33
tcc-MIR403b_MI0017529_Theobroma_cacao_miR403b_stem-loop_123            82   4e-17
rco-MIR403b_MI0013429_Ricinus_communis_miR403b_stem-loop_98            68   7e-13
vvi-MIR403d_MI0007967_Vitis_vinifera_miR403d_stem-loop_86              62   4e-11
vvi-MIR403b_MI0007965_Vitis_vinifera_miR403b_stem-loop_86              62   4e-11
vvi-MIR403c_MI0007966_Vitis_vinifera_miR403c_stem-loop_115             62   4e-11
csi-MIR403_MI0016714_Citrus_sinensis_miR403_stem-loop_130              60   2e-10
rco-MIR403a_MI0013428_Ricinus_communis_miR403a_stem-loop_95            60   2e-10
tcc-MIR403a_MI0017528_Theobroma_cacao_miR403a_stem-loop_126            58   6e-10
ptc-MIR403b_MI0002351_Populus_trichocarpa_miR403b_stem-loop_100        58   6e-10
vvi-MIR403a_MI0007964_Vitis_vinifera_miR403a_stem-loop_115             56   3e-09
vvi-MIR403e_MI0007968_Vitis_vinifera_miR403e_stem-loop_115             56   3e-09
vvi-MIR403f_MI0007969_Vitis_vinifera_miR403f_stem-loop_108             54   1e-08
aly-MIR403_MI0014595_Arabidopsis_lyrata_miR403_stem-loop_125           54   1e-08
ath-MIR403_MI0001072_Arabidopsis_thaliana_miR403_stem-loop_135         54   1e-08
ptc-MIR403a_MI0002350_Populus_trichocarpa_miR403a_stem-loop_132        52   4e-08
ptc-MIR403c_MI0005115_Populus_trichocarpa_miR403c_stem-loop_79         42   4e-05
gma-MIR403b_MI0018632_Glycine_max_miR403b_stem-loop_100                40   1e-04
gma-MIR403a_MI0018631_Glycine_max_miR403a_stem-loop_89                 40   1e-04

>mdm-MIR403b_MI0023116_114
          Length = 114

 Score =  226 bits (114), Expect = 1e-60
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                       
Query: 7   gacggggcacatctccagtttgtgcctgaatcaaaccccatctcagctgtccatctgtct 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gacggggcacatctccagtttgtgcctgaatcaaaccccatctcagctgtccatctgtct 60

                                                                 
Query: 67  gatggctaatccaacggtgttagattcacgcacaaactcgtgatctgtctcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gatggctaatccaacggtgttagattcacgcacaaactcgtgatctgtctcctc 114


>mdm-MIR403a_MI0023115_115
          Length = 115

 Score =  135 bits (68), Expect = 3e-33
 Identities = 105/116 (90%), Gaps = 1/116 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   agacggggcacatctccagtttgtgcctgaatcaaaccccatctcagctgtccatctgtc 65
           ||||||| |||||||||||||||||| |||||| |||||| | | ||| |||||||||| 
Sbjct: 1   agacgggacacatctccagtttgtgcgtgaatcgaacccctttt-agccgtccatctgtt 59

                                                                   
Query: 66  tgatggctaatccaacggtgttagattcacgcacaaactcgtgatctgtctcctct 121
           |||| | ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 60  tgatagataatccaacggtgttagattcacgcacaaactcgtgatcagtctcctct 115


>tcc-MIR403b_MI0017529_Theobroma_cacao_miR403b_stem-loop_123
          Length = 123

 Score = 81.8 bits (41), Expect = 4e-17
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 82  ggtgttagattcacgcacaaactcgtgatctgtctcctctt 122
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  ggtgttagattcacgcacaaactcgtgatctgtctcctctt 119


>rco-MIR403b_MI0013429_Ricinus_communis_miR403b_stem-loop_98
          Length = 98

 Score = 67.9 bits (34), Expect = 7e-13
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 74  aatccaacggtgttagattcacgcacaaactcgtgatc 111
           ||||||| ||||||||||||||||||||||||||||||
Sbjct: 61  aatccaatggtgttagattcacgcacaaactcgtgatc 98


>vvi-MIR403d_MI0007967_Vitis_vinifera_miR403d_stem-loop_86
          Length = 86

 Score = 61.9 bits (31), Expect = 4e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 82  ggtgttagattcacgcacaaactcgtgatctgtct 116
           ||||||||||||||||||||||||| |||||||||
Sbjct: 52  ggtgttagattcacgcacaaactcgggatctgtct 86


>vvi-MIR403b_MI0007965_Vitis_vinifera_miR403b_stem-loop_86
          Length = 86

 Score = 61.9 bits (31), Expect = 4e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 82  ggtgttagattcacgcacaaactcgtgatctgtct 116
           ||||||||||||||||||||||||| |||||||||
Sbjct: 52  ggtgttagattcacgcacaaactcgggatctgtct 86


>vvi-MIR403c_MI0007966_Vitis_vinifera_miR403c_stem-loop_115
          Length = 115

 Score = 61.9 bits (31), Expect = 4e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 85  gttagattcacgcacaaactcgtgatctgtc 115
           |||||||||||||||||||||||||||||||
Sbjct: 84  gttagattcacgcacaaactcgtgatctgtc 114



 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 13 gcacatctccagtttgtgcctgaatcaaaccccatc 48
          ||||||||| ||||||||| ||||||||||||||||
Sbjct: 1  gcacatctcaagtttgtgcgtgaatcaaaccccatc 36


>csi-MIR403_MI0016714_Citrus_sinensis_miR403_stem-loop_130
          Length = 130

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 83  gtgttagattcacgcacaaactcgtgatctgtct 116
           |||||||||||||||||||||||||||| |||||
Sbjct: 97  gtgttagattcacgcacaaactcgtgatgtgtct 130


>rco-MIR403a_MI0013428_Ricinus_communis_miR403a_stem-loop_95
          Length = 95

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 82  ggtgttagattcacgcacaaactcgtgatc 111
           ||||||||||||||||||||||||||||||
Sbjct: 66  ggtgttagattcacgcacaaactcgtgatc 95


>tcc-MIR403a_MI0017528_Theobroma_cacao_miR403a_stem-loop_126
          Length = 126

 Score = 58.0 bits (29), Expect = 6e-10
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 84  tgttagattcacgcacaaactcgtgatctgtct 116
           |||||||||||||||||||||||| ||||||||
Sbjct: 84  tgttagattcacgcacaaactcgtaatctgtct 116


>ptc-MIR403b_MI0002351_Populus_trichocarpa_miR403b_stem-loop_100
          Length = 100

 Score = 58.0 bits (29), Expect = 6e-10
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 75  atccaacggtgttagattcacgcacaaactcgtgatctgtc 115
           |||||| || |||||||||||||||||||||| ||||||||
Sbjct: 60  atccaatggcgttagattcacgcacaaactcgcgatctgtc 100


>vvi-MIR403a_MI0007964_Vitis_vinifera_miR403a_stem-loop_115
          Length = 115

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 13 gcacatctccagtttgtgcctgaatcaaaccccatc 48
          ||||||||| ||||||||| ||||||||||||||||
Sbjct: 1  gcacatctcaagtttgtgcgtgaatcaaaccccatc 36



 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 80  acggtgttagattcacgcacaaactcgtga 109
           |||| |||||||||||||||||||||||||
Sbjct: 79  acggcgttagattcacgcacaaactcgtga 108


>vvi-MIR403e_MI0007968_Vitis_vinifera_miR403e_stem-loop_115
          Length = 115

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 13 gcacatctccagtttgtgcctgaatcaaaccccatc 48
          ||||||||| ||||||||| ||||||||||||||||
Sbjct: 1  gcacatctcaagtttgtgcgtgaatcaaaccccatc 36



 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 85  gttagattcacgcacaaactcgtgatctgtc 115
           |||||||||||||||||||||| ||||||||
Sbjct: 84  gttagattcacgcacaaactcgcgatctgtc 114


>vvi-MIR403f_MI0007969_Vitis_vinifera_miR403f_stem-loop_108
          Length = 108

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 86  ttagattcacgcacaaactcgtgatctgtct 116
           |||||||||||||||||||||| ||||||||
Sbjct: 78  ttagattcacgcacaaactcgtaatctgtct 108


>aly-MIR403_MI0014595_Arabidopsis_lyrata_miR403_stem-loop_125
          Length = 125

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 86  ttagattcacgcacaaactcgtgatctgtct 116
           |||||||||||||||||||||| ||||||||
Sbjct: 91  ttagattcacgcacaaactcgtaatctgtct 121


>ath-MIR403_MI0001072_Arabidopsis_thaliana_miR403_stem-loop_135
          Length = 135

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 86  ttagattcacgcacaaactcgtgatctgtct 116
           |||||||||||||||||||||| ||||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtct 133


>ptc-MIR403a_MI0002350_Populus_trichocarpa_miR403a_stem-loop_132
          Length = 132

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 86  ttagattcacgcacaaactcgtgatctgtc 115
           |||||||||||||||||||||| |||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtc 132


>ptc-MIR403c_MI0005115_Populus_trichocarpa_miR403c_stem-loop_79
          Length = 79

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 86  ttagattcacgcacaaactcg 106
           |||||||||||||||||||||
Sbjct: 59  ttagattcacgcacaaactcg 79


>gma-MIR403b_MI0018632_Glycine_max_miR403b_stem-loop_100
          Length = 100

 Score = 40.1 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 85  gttagattcacgcacaaact 104
           ||||||||||||||||||||
Sbjct: 63  gttagattcacgcacaaact 82


>gma-MIR403a_MI0018631_Glycine_max_miR403a_stem-loop_89
          Length = 89

 Score = 40.1 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 85  gttagattcacgcacaaact 104
           ||||||||||||||||||||
Sbjct: 62  gttagattcacgcacaaact 81


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.