(124 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR403a_MI0023115_115                                             229   1e-61
mdm-MIR403b_MI0023116_114                                             132   3e-32
tcc-MIR403b_MI0017529_Theobroma_cacao_miR403b_stem-loop_123            72   3e-14
rco-MIR403b_MI0013429_Ricinus_communis_miR403b_stem-loop_98            68   5e-13
rco-MIR403a_MI0013428_Ricinus_communis_miR403a_stem-loop_95            60   1e-10
csi-MIR403_MI0016714_Citrus_sinensis_miR403_stem-loop_130              56   2e-09
vvi-MIR403d_MI0007967_Vitis_vinifera_miR403d_stem-loop_86              54   8e-09
vvi-MIR403b_MI0007965_Vitis_vinifera_miR403b_stem-loop_86              54   8e-09
vvi-MIR403c_MI0007966_Vitis_vinifera_miR403c_stem-loop_115             54   8e-09
vvi-MIR403a_MI0007964_Vitis_vinifera_miR403a_stem-loop_115             52   3e-08
tcc-MIR403a_MI0017528_Theobroma_cacao_miR403a_stem-loop_126            50   1e-07
ptc-MIR403b_MI0002351_Populus_trichocarpa_miR403b_stem-loop_100        50   1e-07
vvi-MIR403e_MI0007968_Vitis_vinifera_miR403e_stem-loop_115             48   5e-07
vvi-MIR403f_MI0007969_Vitis_vinifera_miR403f_stem-loop_108             46   2e-06
aly-MIR403_MI0014595_Arabidopsis_lyrata_miR403_stem-loop_125           46   2e-06
ath-MIR403_MI0001072_Arabidopsis_thaliana_miR403_stem-loop_135         46   2e-06
ptc-MIR403a_MI0002350_Populus_trichocarpa_miR403a_stem-loop_132        44   8e-06
ptc-MIR403c_MI0005115_Populus_trichocarpa_miR403c_stem-loop_79         42   3e-05
gma-MIR403b_MI0018632_Glycine_max_miR403b_stem-loop_100                40   1e-04
gma-MIR403a_MI0018631_Glycine_max_miR403a_stem-loop_89                 40   1e-04

>mdm-MIR403a_MI0023115_115
          Length = 115

 Score =  229 bits (115), Expect = 1e-61
 Identities = 115/115 (100%)
 Strand = Plus / Plus

                                                                       
Query: 6   agacgggacacatctccagtttgtgcgtgaatcgaaccccttttagccgtccatctgttt 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agacgggacacatctccagtttgtgcgtgaatcgaaccccttttagccgtccatctgttt 60

                                                                  
Query: 66  gatagataatccaacggtgttagattcacgcacaaactcgtgatcagtctcctct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gatagataatccaacggtgttagattcacgcacaaactcgtgatcagtctcctct 115


>mdm-MIR403b_MI0023116_114
          Length = 114

 Score =  132 bits (66), Expect = 3e-32
 Identities = 103/114 (90%), Gaps = 1/114 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gacgggacacatctccagtttgtgcgtgaatcgaacccctttt-agccgtccatctgttt 65
           |||||| |||||||||||||||||| |||||| |||||| | | ||| |||||||||| |
Sbjct: 1   gacggggcacatctccagtttgtgcctgaatcaaaccccatctcagctgtccatctgtct 60

                                                                 
Query: 66  gatagataatccaacggtgttagattcacgcacaaactcgtgatcagtctcctc 119
           ||| | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61  gatggctaatccaacggtgttagattcacgcacaaactcgtgatctgtctcctc 114


>tcc-MIR403b_MI0017529_Theobroma_cacao_miR403b_stem-loop_123
          Length = 123

 Score = 72.2 bits (36), Expect = 3e-14
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                   
Query: 81  ggtgttagattcacgcacaaactcgtgatcagtctcctct 120
           |||||||||||||||||||||||||||||| |||||||||
Sbjct: 79  ggtgttagattcacgcacaaactcgtgatctgtctcctct 118



 Score = 44.3 bits (22), Expect = 8e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 gggacacatctccagtttgtgc 31
          ||||||||||||||||||||||
Sbjct: 8  gggacacatctccagtttgtgc 29


>rco-MIR403b_MI0013429_Ricinus_communis_miR403b_stem-loop_98
          Length = 98

 Score = 68.3 bits (34), Expect = 5e-13
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 73  aatccaacggtgttagattcacgcacaaactcgtgatc 110
           ||||||| ||||||||||||||||||||||||||||||
Sbjct: 61  aatccaatggtgttagattcacgcacaaactcgtgatc 98



 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 18 tctccagtttgtgcgtgaatcgaacccc 45
          |||| |||||||||||||||||| ||||
Sbjct: 1  tctctagtttgtgcgtgaatcgagcccc 28


>rco-MIR403a_MI0013428_Ricinus_communis_miR403a_stem-loop_95
          Length = 95

 Score = 60.3 bits (30), Expect = 1e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 81  ggtgttagattcacgcacaaactcgtgatc 110
           ||||||||||||||||||||||||||||||
Sbjct: 66  ggtgttagattcacgcacaaactcgtgatc 95


>csi-MIR403_MI0016714_Citrus_sinensis_miR403_stem-loop_130
          Length = 130

 Score = 56.3 bits (28), Expect = 2e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 82  gtgttagattcacgcacaaactcgtgat 109
           ||||||||||||||||||||||||||||
Sbjct: 97  gtgttagattcacgcacaaactcgtgat 124



 Score = 38.4 bits (19), Expect = 5e-04
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 12  gacacatctccagtttgtgcgtgaatc 38
           |||||||| | ||||||||||||||||
Sbjct: 129 gacacatcacgagtttgtgcgtgaatc 103


>vvi-MIR403d_MI0007967_Vitis_vinifera_miR403d_stem-loop_86
          Length = 86

 Score = 54.3 bits (27), Expect = 8e-09
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 81  ggtgttagattcacgcacaaactcgtgatcagtct 115
           ||||||||||||||||||||||||| |||| ||||
Sbjct: 52  ggtgttagattcacgcacaaactcgggatctgtct 86


>vvi-MIR403b_MI0007965_Vitis_vinifera_miR403b_stem-loop_86
          Length = 86

 Score = 54.3 bits (27), Expect = 8e-09
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 81  ggtgttagattcacgcacaaactcgtgatcagtct 115
           ||||||||||||||||||||||||| |||| ||||
Sbjct: 52  ggtgttagattcacgcacaaactcgggatctgtct 86


>vvi-MIR403c_MI0007966_Vitis_vinifera_miR403c_stem-loop_115
          Length = 115

 Score = 54.3 bits (27), Expect = 8e-09
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 84  gttagattcacgcacaaactcgtgatc 110
           |||||||||||||||||||||||||||
Sbjct: 84  gttagattcacgcacaaactcgtgatc 110



 Score = 48.3 bits (24), Expect = 5e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 14 cacatctccagtttgtgcgtgaatcgaacccc 45
          |||||||| |||||||||||||||| ||||||
Sbjct: 2  cacatctcaagtttgtgcgtgaatcaaacccc 33


>vvi-MIR403a_MI0007964_Vitis_vinifera_miR403a_stem-loop_115
          Length = 115

 Score = 52.3 bits (26), Expect = 3e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 79  acggtgttagattcacgcacaaactcgtga 108
           |||| |||||||||||||||||||||||||
Sbjct: 79  acggcgttagattcacgcacaaactcgtga 108



 Score = 48.3 bits (24), Expect = 5e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 14 cacatctccagtttgtgcgtgaatcgaacccc 45
          |||||||| |||||||||||||||| ||||||
Sbjct: 2  cacatctcaagtttgtgcgtgaatcaaacccc 33


>tcc-MIR403a_MI0017528_Theobroma_cacao_miR403a_stem-loop_126
          Length = 126

 Score = 50.3 bits (25), Expect = 1e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 83  tgttagattcacgcacaaactcgtgatcagtct 115
           |||||||||||||||||||||||| ||| ||||
Sbjct: 84  tgttagattcacgcacaaactcgtaatctgtct 116


>ptc-MIR403b_MI0002351_Populus_trichocarpa_miR403b_stem-loop_100
          Length = 100

 Score = 50.3 bits (25), Expect = 1e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 74  atccaacggtgttagattcacgcacaaactcgtgatc 110
           |||||| || |||||||||||||||||||||| ||||
Sbjct: 60  atccaatggcgttagattcacgcacaaactcgcgatc 96


>vvi-MIR403e_MI0007968_Vitis_vinifera_miR403e_stem-loop_115
          Length = 115

 Score = 48.3 bits (24), Expect = 5e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 14 cacatctccagtttgtgcgtgaatcgaacccc 45
          |||||||| |||||||||||||||| ||||||
Sbjct: 2  cacatctcaagtttgtgcgtgaatcaaacccc 33



 Score = 46.3 bits (23), Expect = 2e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 84  gttagattcacgcacaaactcgtgatc 110
           |||||||||||||||||||||| ||||
Sbjct: 84  gttagattcacgcacaaactcgcgatc 110


>vvi-MIR403f_MI0007969_Vitis_vinifera_miR403f_stem-loop_108
          Length = 108

 Score = 46.3 bits (23), Expect = 2e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 85  ttagattcacgcacaaactcgtgatcagtct 115
           |||||||||||||||||||||| ||| ||||
Sbjct: 78  ttagattcacgcacaaactcgtaatctgtct 108


>aly-MIR403_MI0014595_Arabidopsis_lyrata_miR403_stem-loop_125
          Length = 125

 Score = 46.3 bits (23), Expect = 2e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 85  ttagattcacgcacaaactcgtgatcagtct 115
           |||||||||||||||||||||| ||| ||||
Sbjct: 91  ttagattcacgcacaaactcgtaatctgtct 121


>ath-MIR403_MI0001072_Arabidopsis_thaliana_miR403_stem-loop_135
          Length = 135

 Score = 46.3 bits (23), Expect = 2e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 85  ttagattcacgcacaaactcgtgatcagtct 115
           |||||||||||||||||||||| ||| ||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtct 133


>ptc-MIR403a_MI0002350_Populus_trichocarpa_miR403a_stem-loop_132
          Length = 132

 Score = 44.3 bits (22), Expect = 8e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 85  ttagattcacgcacaaactcgt 106
           ||||||||||||||||||||||
Sbjct: 103 ttagattcacgcacaaactcgt 124


>ptc-MIR403c_MI0005115_Populus_trichocarpa_miR403c_stem-loop_79
          Length = 79

 Score = 42.3 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 85  ttagattcacgcacaaactcg 105
           |||||||||||||||||||||
Sbjct: 59  ttagattcacgcacaaactcg 79


>gma-MIR403b_MI0018632_Glycine_max_miR403b_stem-loop_100
          Length = 100

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 84  gttagattcacgcacaaact 103
           ||||||||||||||||||||
Sbjct: 63  gttagattcacgcacaaact 82


>gma-MIR403a_MI0018631_Glycine_max_miR403a_stem-loop_89
          Length = 89

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 84  gttagattcacgcacaaact 103
           ||||||||||||||||||||
Sbjct: 62  gttagattcacgcacaaact 81


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.