(168 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

zma-MIR395k_MI0013219_Zea_mays_miR395k_stem-loop_84                    42   5e-05
zma-MIR395o_MI0013223_Zea_mays_miR395o_stem-loop_226                   38   8e-04
bdi-MIR395b_MI0018088_Brachypodium_distachyon_miR395b_stem-loop_238    38   8e-04
bdi-MIR395m_MI0018219_Brachypodium_distachyon_miR395m_stem-loop_95     38   8e-04
bdi-MIR395n_MI0018227_Brachypodium_distachyon_miR395n_stem-loop_90     38   8e-04
bdi-MIR395l_MI0018226_Brachypodium_distachyon_miR395l_stem-loop_96     38   8e-04
mtr-MIR395r_MI0005633_Medicago_truncatula_miR395r_stem-loop_111        38   8e-04
tae-MIR395b_MI0016464_Triticum_aestivum_miR395b_stem-loop_124          38   8e-04

>zma-MIR395k_MI0013219_Zea_mays_miR395k_stem-loop_84
          Length = 84

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 29 agagtttcctcaaacacttca 49
          |||||||||||||||||||||
Sbjct: 84 agagtttcctcaaacacttca 64


>zma-MIR395o_MI0013223_Zea_mays_miR395o_stem-loop_226
          Length = 226

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 123 aagtgtttgggggaacccttggagtca 149
           |||||||||||||||| ||||| ||||
Sbjct: 48  aagtgtttgggggaactcttggtgtca 74


>bdi-MIR395b_MI0018088_Brachypodium_distachyon_miR395b_stem-loop_238
          Length = 238

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 123 aagtgtttgggggaacccttggagtca 149
           |||||||||||||||| ||||| ||||
Sbjct: 189 aagtgtttgggggaactcttggtgtca 215


>bdi-MIR395m_MI0018219_Brachypodium_distachyon_miR395m_stem-loop_95
          Length = 95

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 123 aagtgtttgggggaacccttggagtca 149
           |||||||||||||||| ||||| ||||
Sbjct: 66  aagtgtttgggggaactcttggtgtca 92


>bdi-MIR395n_MI0018227_Brachypodium_distachyon_miR395n_stem-loop_90
          Length = 90

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 123 aagtgtttgggggaacccttggagtca 149
           |||||||||||||||| ||||| ||||
Sbjct: 61  aagtgtttgggggaactcttggtgtca 87


>bdi-MIR395l_MI0018226_Brachypodium_distachyon_miR395l_stem-loop_96
          Length = 96

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 123 aagtgtttgggggaacccttggagtca 149
           |||||||||||||||| ||||| ||||
Sbjct: 64  aagtgtttgggggaactcttggtgtca 90


>mtr-MIR395r_MI0005633_Medicago_truncatula_miR395r_stem-loop_111
          Length = 111

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 123 aagtgtttgggggaacccttgga 145
           |||||||||||||||| ||||||
Sbjct: 89  aagtgtttgggggaactcttgga 111


>tae-MIR395b_MI0016464_Triticum_aestivum_miR395b_stem-loop_124
          Length = 124

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 123 aagtgtttgggggaacccttggagtca 149
           |||||||||||||||| ||||| ||||
Sbjct: 4   aagtgtttgggggaactcttggtgtca 30


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.