(103 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR160e_MI0023008_88                                              174   3e-45
mdm-MIR160c_MI0023006_88                                              143   1e-35
ptc-MIR160b_MI0002202_Populus_trichocarpa_miR160b_stem-loop_98        129   2e-31
csi-MIR160_MI0013294_Citrus_sinensis_miR160_stem-loop_143             127   7e-31
ptc-MIR160c_MI0002203_Populus_trichocarpa_miR160c_stem-loop_98        115   3e-27
vvi-MIR160e_MI0006501_Vitis_vinifera_miR160e_stem-loop_102            113   1e-26
aly-MIR160a_MI0014521_Arabidopsis_lyrata_miR160a_stem-loop_158         98   6e-22
ath-MIR160a_MI0000190_Arabidopsis_thaliana_miR160a_stem-loop_85        94   9e-21
gma-MIR160_MI0001774_Glycine_max_miR160_stem-loop_119                  80   1e-16
gma-MIR160b_MI0017821_Glycine_max_miR160b_stem-loop_90                 68   5e-13
vun-MIR160_MI0019568_Vigna_unguiculata_miR160_stem-loop_117            62   3e-11
bra-MIR160a_MI0010650_Brassica_rapa_miR160a_stem-loop_127              62   3e-11
gma-MIR160e_MI0017824_Glycine_max_miR160e_stem-loop_90                 62   3e-11
gma-MIR160c_MI0017822_Glycine_max_miR160c_stem-loop_91                 60   1e-10
mtr-MIR160_MI0001739_Medicago_truncatula_miR160_stem-loop_119          60   1e-10
vvi-MIR160d_MI0006499_Vitis_vinifera_miR160d_stem-loop_102             58   5e-10
mtr-MIR160d_MI0005615_Medicago_truncatula_miR160d_stem-loop_91         58   5e-10
aau-MIR160_MI0018979_Acacia_auriculiformis_miR160_stem-loop_88         56   2e-09
tcc-MIR160b_MI0017461_Theobroma_cacao_miR160b_stem-loop_120            54   8e-09
ptc-MIR160h_MI0002208_Populus_trichocarpa_miR160h_stem-loop_98         54   8e-09
rco-MIR160a_MI0013379_Ricinus_communis_miR160a_stem-loop_92            54   8e-09
sly-MIR160a_MI0008357_Solanum_lycopersicum_miR160a_stem-loop_129       54   8e-09
mtr-MIR160e_MI0005629_Medicago_truncatula_miR160e_stem-loop_91         52   3e-08
mtr-MIR160b_MI0005574_Medicago_truncatula_miR160b_stem-loop_91         52   3e-08
aqc-MIR160b_MI0012072_Aquilegia_caerulea_miR160b_stem-loop_82          52   3e-08
gma-MIR160d_MI0017823_Glycine_max_miR160d_stem-loop_91                 50   1e-07
zma-MIR160c_MI0001466_Zea_mays_miR160c_stem-loop_100                   48   5e-07
bdi-MIR160d_MI0018106_Brachypodium_distachyon_miR160d_stem-loop_150    48   5e-07
ttu-MIR160_MI0016454_Triticum_turgidum_miR160_stem-loop_100            48   5e-07
osa-MIR160c_MI0000665_Oryza_sativa_miR160c_stem-loop_99                48   5e-07
pab-MIR160a_MI0016116_Picea_abies_miR160a_stem-loop_106                46   2e-06
vvi-MIR160c_MI0006498_Vitis_vinifera_miR160c_stem-loop_106             46   2e-06
bdi-MIR160c_MI0018100_Brachypodium_distachyon_miR160c_stem-loop_148    46   2e-06
osa-MIR160a_MI0000663_Oryza_sativa_miR160a_stem-loop_88                46   2e-06
zma-MIR160b_MI0001468_Zea_mays_miR160b_stem-loop_121                   46   2e-06
smo-MIR160a_MI0006051_Selaginella_moellendorffii_miR160a_stem-lo...    44   8e-06
bdi-MIR160b_MI0018093_Brachypodium_distachyon_miR160b_stem-loop_146    44   8e-06
osa-MIR160b_MI0000664_Oryza_sativa_miR160b_stem-loop_139               44   8e-06
aly-MIR160b_MI0014522_Arabidopsis_lyrata_miR160b_stem-loop_125         44   8e-06
zma-MIR160a_MI0001465_Zea_mays_miR160a_stem-loop_104                   44   8e-06
ath-MIR160b_MI0000191_Arabidopsis_thaliana_miR160b_stem-loop_89        44   8e-06
ppt-MIR160e_MI0005901_Physcomitrella_patens_miR160e_stem-loop_138      44   8e-06
pab-MIR160b_MI0016117_Picea_abies_miR160b_stem-loop_116                44   8e-06
osa-MIR160d_MI0000666_Oryza_sativa_miR160d_stem-loop_142               42   3e-05
tae-MIR160_MI0006172_Triticum_aestivum_miR160_stem-loop_148            42   3e-05
ppt-MIR160a_MI0005655_Physcomitrella_patens_miR160a_stem-loop_99       42   3e-05
zma-MIR160e_MI0001479_Zea_mays_miR160e_stem-loop_94                    42   3e-05
rco-MIR160b_MI0013380_Ricinus_communis_miR160b_stem-loop_96            42   3e-05
ath-MIR160c_MI0000192_Arabidopsis_thaliana_miR160c_stem-loop_89        42   3e-05
far-MIR160_MI0016604_Festuca_arundinacea_miR160_stem-loop_148          42   3e-05
bdi-MIR160a_MI0018086_Brachypodium_distachyon_miR160a_stem-loop_175    42   3e-05
aly-MIR160c_MI0014523_Arabidopsis_lyrata_miR160c_stem-loop_119         42   3e-05
sbi-MIR160c_MI0001509_Sorghum_bicolor_miR160c_stem-loop_83             42   3e-05
mdm-MIR160a_MI0023004_83                                               42   3e-05
smo-MIR160b_MI0006052_Selaginella_moellendorffii_miR160b_stem-lo...    42   3e-05
sbi-MIR160e_MI0001511_Sorghum_bicolor_miR160e_stem-loop_95             42   3e-05
sbi-MIR160d_MI0001507_Sorghum_bicolor_miR160d_stem-loop_100            42   3e-05
sbi-MIR160b_MI0001510_Sorghum_bicolor_miR160b_stem-loop_82             42   3e-05
mdm-MIR160b_MI0023005_89                                               42   3e-05
mdm-MIR160d_MI0023007_89                                               42   3e-05
zma-MIR160d_MI0001467_Zea_mays_miR160d_stem-loop_142                   42   3e-05
ppt-MIR160f_MI0005902_Physcomitrella_patens_miR160f_stem-loop_138      42   3e-05
ptc-MIR160a_MI0002201_Populus_trichocarpa_miR160a_stem-loop_102        42   3e-05
ptc-MIR160d_MI0002204_Populus_trichocarpa_miR160d_stem-loop_103        42   3e-05
zma-MIR160g_MI0013192_Zea_mays_miR160g_stem-loop_86                    42   3e-05
sbi-MIR160a_MI0001508_Sorghum_bicolor_miR160a_stem-loop_84             42   3e-05
ppt-MIR160i_MI0005905_Physcomitrella_patens_miR160i_stem-loop_139      40   1e-04
zma-MIR160f_MI0001848_Zea_mays_miR160f_stem-loop_116                   40   1e-04
ppt-MIR160b_MI0005656_Physcomitrella_patens_miR160b_stem-loop_103      40   1e-04
osa-MIR160e_MI0001100_Oryza_sativa_miR160e_stem-loop_114               40   1e-04

>mdm-MIR160e_MI0023008_88
          Length = 88

 Score =  174 bits (88), Expect = 3e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 9  tatgtgcctggctccctgtatgccatttgcagagttccaccgaacatcgatggcctccgt 68
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tatgtgcctggctccctgtatgccatttgcagagttccaccgaacatcgatggcctccgt 60

                                      
Query: 69 ggatggcgtatgaggagccatgcatata 96
          ||||||||||||||||||||||||||||
Sbjct: 61 ggatggcgtatgaggagccatgcatata 88


>mdm-MIR160c_MI0023006_88
          Length = 88

 Score =  143 bits (72), Expect = 1e-35
 Identities = 84/88 (95%)
 Strand = Plus / Plus

                                                                      
Query: 9  tatgtgcctggctccctgtatgccatttgcagagttccaccgaacatcgatggcctccgt 68
          ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||
Sbjct: 1  tatgtgcctggctccctgtatgccatttgcagagtcccaccgaacagcgatggcctctgt 60

                                      
Query: 69 ggatggcgtatgaggagccatgcatata 96
          |||||||||||||||||||| |||||||
Sbjct: 61 ggatggcgtatgaggagccaagcatata 88


>ptc-MIR160b_MI0002202_Populus_trichocarpa_miR160b_stem-loop_98
          Length = 98

 Score =  129 bits (65), Expect = 2e-31
 Identities = 83/89 (93%)
 Strand = Plus / Plus

                                                                      
Query: 7  tatatgtgcctggctccctgtatgccatttgcagagttccaccgaacatcgatggcctcc 66
          ||||||||||||||||||||||||||||||||||||  | || || | ||||||||||||
Sbjct: 5  tatatgtgcctggctccctgtatgccatttgcagagcccaacggatcctcgatggcctcc 64

                                       
Query: 67 gtggatggcgtatgaggagccatgcatat 95
          |||||||||||||||||||||||||||||
Sbjct: 65 gtggatggcgtatgaggagccatgcatat 93


>csi-MIR160_MI0013294_Citrus_sinensis_miR160_stem-loop_143
          Length = 143

 Score =  127 bits (64), Expect = 7e-31
 Identities = 84/88 (95%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                       
Query: 9   tatgtgcctggctccctgtatgccatttgcagagttccaccgaa-catcgatggcctccg 67
           ||||||||||||||||||||||||||||||||||| | | |||| |||||||||||||||
Sbjct: 29  tatgtgcctggctccctgtatgccatttgcagagt-caatcgaaacatcgatggcctccg 87

                                       
Query: 68  tggatggcgtatgaggagccatgcatat 95
           ||||||||||||||||||||||||||||
Sbjct: 88  tggatggcgtatgaggagccatgcatat 115


>ptc-MIR160c_MI0002203_Populus_trichocarpa_miR160c_stem-loop_98
          Length = 98

 Score =  115 bits (58), Expect = 3e-27
 Identities = 84/90 (93%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                      
Query: 7  tatatgtgcctggctccctgtatgccatttgcagagttccaccgaa-catcgatggcctc 65
          ||||||||||||||||||||||||||||||||||||  ||||||   | |||||||||||
Sbjct: 5  tatatgtgcctggctccctgtatgccatttgcagagc-ccaccggttcttcgatggcctc 63

                                        
Query: 66 cgtggatggcgtatgaggagccatgcatat 95
          ||||||||||||||||||||||||||||||
Sbjct: 64 cgtggatggcgtatgaggagccatgcatat 93


>vvi-MIR160e_MI0006501_Vitis_vinifera_miR160e_stem-loop_102
          Length = 102

 Score =  113 bits (57), Expect = 1e-26
 Identities = 83/89 (93%), Gaps = 2/89 (2%)
 Strand = Plus / Plus

                                                                      
Query: 8  atatgtgcctggctccctgtatgccatttgcagagttccaccga-acatcgatggcctcc 66
          |||| ||||||||||||||||||||||||||||||  ||||||  ||||||||||||| |
Sbjct: 6  atatatgcctggctccctgtatgccatttgcagagc-ccaccggcacatcgatggccttc 64

                                       
Query: 67 gtggatggcgtatgaggagccatgcatat 95
          |||||||||||||||||||||||||||||
Sbjct: 65 gtggatggcgtatgaggagccatgcatat 93


>aly-MIR160a_MI0014521_Arabidopsis_lyrata_miR160a_stem-loop_158
          Length = 158

 Score = 97.6 bits (49), Expect = 6e-22
 Identities = 83/93 (89%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   tatatatatgtgcctggctccctgtatgccatttgcagagttccaccgaacatcgatggc 62
           ||||||| | |||||||||||||||||||||| ||| ||| || | |||  ||||||| |
Sbjct: 32  tatatatgtatgcctggctccctgtatgccatatgctgagctc-atcgagtatcgatgac 90

                                            
Query: 63  ctccgtggatggcgtatgaggagccatgcatat 95
           |||||||||||||||||||||||||||||||||
Sbjct: 91  ctccgtggatggcgtatgaggagccatgcatat 123


>ath-MIR160a_MI0000190_Arabidopsis_thaliana_miR160a_stem-loop_85
          Length = 85

 Score = 93.7 bits (47), Expect = 9e-21
 Identities = 75/83 (90%), Gaps = 1/83 (1%)
 Strand = Plus / Plus

                                                                      
Query: 13 tgcctggctccctgtatgccatttgcagagttccaccgaacatcgatggcctccgtggat 72
          |||||||||||||||||||||| ||| |||  ||| |||  ||||||| |||||||||||
Sbjct: 4  tgcctggctccctgtatgccatatgctgagc-ccatcgagtatcgatgacctccgtggat 62

                                 
Query: 73 ggcgtatgaggagccatgcatat 95
          |||||||||||||||||||||||
Sbjct: 63 ggcgtatgaggagccatgcatat 85


>gma-MIR160_MI0001774_Glycine_max_miR160_stem-loop_119
          Length = 119

 Score = 79.8 bits (40), Expect = 1e-16
 Identities = 78/88 (88%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                       
Query: 9   tatgtgcctggctccctgtatgccatttgcagagttccaccgaa-catcgatggcctccg 67
           ||||||||||||||||||||||||||||| |||| | || |||| |||| ||| |||  |
Sbjct: 17  tatgtgcctggctccctgtatgccatttgtagagct-catcgaagcatcaatgacctttg 75

                                       
Query: 68  tggatggcgtatgaggagccatgcatat 95
           ||||||||||||||||||||| ||||||
Sbjct: 76  tggatggcgtatgaggagccaagcatat 103


>gma-MIR160b_MI0017821_Glycine_max_miR160b_stem-loop_90
          Length = 90

 Score = 67.9 bits (34), Expect = 5e-13
 Identities = 74/86 (86%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  tatgtgcctggctccctgtatgccatttgcagagttccaccgaacatcgatggcctccgt 68
          ||||||||||||||||||||||||||||||| |||| ||  || |||| |||  ||  ||
Sbjct: 6  tatgtgcctggctccctgtatgccatttgcatagtt-cattgagcatcaatgatctttgt 64

                                    
Query: 69 ggatggcgtatgaggagccatgcata 94
          | |||||||||||||||||| |||||
Sbjct: 65 gaatggcgtatgaggagccaagcata 90


>vun-MIR160_MI0019568_Vigna_unguiculata_miR160_stem-loop_117
          Length = 117

 Score = 61.9 bits (31), Expect = 3e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 12 gtgcctggctccctgtatgccatttgcagag 42
          |||||||||||||||||||||||||||||||
Sbjct: 17 gtgcctggctccctgtatgccatttgcagag 47


>bra-MIR160a_MI0010650_Brassica_rapa_miR160a_stem-loop_127
          Length = 127

 Score = 61.9 bits (31), Expect = 3e-11
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 57  gatggcctccgtggatggcgtatgaggagccatgcatat 95
           |||| |||||||| |||||||||||||||||||||||||
Sbjct: 69  gatgacctccgtgaatggcgtatgaggagccatgcatat 107


>gma-MIR160e_MI0017824_Glycine_max_miR160e_stem-loop_90
          Length = 90

 Score = 61.9 bits (31), Expect = 3e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 12 gtgcctggctccctgtatgccatttgcagag 42
          |||||||||||||||||||||||||||||||
Sbjct: 9  gtgcctggctccctgtatgccatttgcagag 39


>gma-MIR160c_MI0017822_Glycine_max_miR160c_stem-loop_91
          Length = 91

 Score = 60.0 bits (30), Expect = 1e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 13 tgcctggctccctgtatgccatttgcagag 42
          ||||||||||||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgccatttgcagag 30


>mtr-MIR160_MI0001739_Medicago_truncatula_miR160_stem-loop_119
          Length = 119

 Score = 60.0 bits (30), Expect = 1e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 12 gtgcctggctccctgtatgccatttgcagagttc 45
          |||||||||||||||||||||||||| |||||||
Sbjct: 20 gtgcctggctccctgtatgccatttgtagagttc 53


>vvi-MIR160d_MI0006499_Vitis_vinifera_miR160d_stem-loop_102
          Length = 102

 Score = 58.0 bits (29), Expect = 5e-10
 Identities = 68/81 (83%)
 Strand = Plus / Plus

                                                                      
Query: 13 tgcctggctccctgtatgccatttgcagagttccaccgaacatcgatggcctccgtggat 72
          ||||||||||||||||||||||||||| ||| |  ||||  || | | |||| || ||||
Sbjct: 11 tgcctggctccctgtatgccatttgcaaagtccacccgaggattggtagccttcgcggat 70

                               
Query: 73 ggcgtatgaggagccatgcat 93
          |||||  ||||||||||||||
Sbjct: 71 ggcgtgcgaggagccatgcat 91


>mtr-MIR160d_MI0005615_Medicago_truncatula_miR160d_stem-loop_91
          Length = 91

 Score = 58.0 bits (29), Expect = 5e-10
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 11 tgtgcctggctccctgtatgccatttgcagagt 43
          ||||||||||||||||||||||||||| |||||
Sbjct: 4  tgtgcctggctccctgtatgccatttgtagagt 36


>aau-MIR160_MI0018979_Acacia_auriculiformis_miR160_stem-loop_88
          Length = 88

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                      
Query: 12 gtgcctggctccctgtatgccatttgca 39
          ||||||||||||||||||||||||||||
Sbjct: 85 gtgcctggctccctgtatgccatttgca 58


>tcc-MIR160b_MI0017461_Theobroma_cacao_miR160b_stem-loop_120
          Length = 120

 Score = 54.0 bits (27), Expect = 8e-09
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 13 tgcctggctccctgtatgccatttgca 39
          |||||||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccatttgca 47



 Score = 38.2 bits (19), Expect = 5e-04
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 59  tggcctccgtggatggcgtatgaggagccatgcat 93
           |||||| |||||||||| |  ||||||||||||||
Sbjct: 67  tggccttcgtggatggcatgcgaggagccatgcat 101


>ptc-MIR160h_MI0002208_Populus_trichocarpa_miR160h_stem-loop_98
          Length = 98

 Score = 54.0 bits (27), Expect = 8e-09
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                      
Query: 11 tgtgcctggctccctgtatgccatttgcagagttccaccgaacatcgatggcctccgtgg 70
          |||||||||||||||| |||||||||||| || ||  | |||| ||| ||||||  ||||
Sbjct: 9  tgtgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggccttggtgg 68

                 
Query: 71 atggcgt 77
          |||||||
Sbjct: 69 atggcgt 75


>rco-MIR160a_MI0013379_Ricinus_communis_miR160a_stem-loop_92
          Length = 92

 Score = 54.0 bits (27), Expect = 8e-09
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 11 tgtgcctggctccctgtatgccatttg 37
          |||||||||||||||||||||||||||
Sbjct: 4  tgtgcctggctccctgtatgccatttg 30


>sly-MIR160a_MI0008357_Solanum_lycopersicum_miR160a_stem-loop_129
          Length = 129

 Score = 54.0 bits (27), Expect = 8e-09
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 13 tgcctggctccctgtatgccatttgca 39
          |||||||||||||||||||||||||||
Sbjct: 20 tgcctggctccctgtatgccatttgca 46



 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 71  atggcgtatgaggagccatgcatat 95
           |||||||||||||||||| ||||||
Sbjct: 81  atggcgtatgaggagccaagcatat 105


>mtr-MIR160e_MI0005629_Medicago_truncatula_miR160e_stem-loop_91
          Length = 91

 Score = 52.0 bits (26), Expect = 3e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 9  tatgtgcctggctccctgtatgccat 34
          ||||||||||||||||||||||||||
Sbjct: 2  tatgtgcctggctccctgtatgccat 27



 Score = 50.1 bits (25), Expect = 1e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 67 gtggatggcgtatgaggagccatgcatat 95
          |||||||||||||||||||||| ||||||
Sbjct: 60 gtggatggcgtatgaggagccaagcatat 88


>mtr-MIR160b_MI0005574_Medicago_truncatula_miR160b_stem-loop_91
          Length = 91

 Score = 52.0 bits (26), Expect = 3e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 9  tatgtgcctggctccctgtatgccat 34
          ||||||||||||||||||||||||||
Sbjct: 2  tatgtgcctggctccctgtatgccat 27



 Score = 50.1 bits (25), Expect = 1e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 67 gtggatggcgtatgaggagccatgcatat 95
          |||||||||||||||||||||| ||||||
Sbjct: 60 gtggatggcgtatgaggagccaagcatat 88


>aqc-MIR160b_MI0012072_Aquilegia_caerulea_miR160b_stem-loop_82
          Length = 82

 Score = 52.0 bits (26), Expect = 3e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 13 tgcctggctccctgtatgccatttgc 38
          ||||||||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgccatttgc 26



 Score = 44.1 bits (22), Expect = 8e-06
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                
Query: 57 gatggcctccgtggatggcgtatgaggagccatgcata 94
          ||||||||  |||||||||||  |||||||||||||||
Sbjct: 45 gatggcctttgtggatggcgtgcgaggagccatgcata 82


>gma-MIR160d_MI0017823_Glycine_max_miR160d_stem-loop_91
          Length = 91

 Score = 50.1 bits (25), Expect = 1e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 13 tgcctggctccctgtatgccatttg 37
          |||||||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgccatttg 25



 Score = 38.2 bits (19), Expect = 5e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 71 atggcgtatgaggagccatgcat 93
          ||||||||||||||| |||||||
Sbjct: 59 atggcgtatgaggagtcatgcat 81


>zma-MIR160c_MI0001466_Zea_mays_miR160c_stem-loop_100
          Length = 100

 Score = 48.1 bits (24), Expect = 5e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 10 atgtgcctggctccctgtatgcca 33
          ||||||||||||||||||||||||
Sbjct: 4  atgtgcctggctccctgtatgcca 27


>bdi-MIR160d_MI0018106_Brachypodium_distachyon_miR160d_stem-
          loop_150
          Length = 150

 Score = 48.1 bits (24), Expect = 5e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 10 atgtgcctggctccctgtatgcca 33
          ||||||||||||||||||||||||
Sbjct: 28 atgtgcctggctccctgtatgcca 51


>ttu-MIR160_MI0016454_Triticum_turgidum_miR160_stem-loop_100
          Length = 100

 Score = 48.1 bits (24), Expect = 5e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 10 atgtgcctggctccctgtatgcca 33
          ||||||||||||||||||||||||
Sbjct: 6  atgtgcctggctccctgtatgcca 29


>osa-MIR160c_MI0000665_Oryza_sativa_miR160c_stem-loop_99
          Length = 99

 Score = 48.1 bits (24), Expect = 5e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 10 atgtgcctggctccctgtatgcca 33
          ||||||||||||||||||||||||
Sbjct: 4  atgtgcctggctccctgtatgcca 27


>pab-MIR160a_MI0016116_Picea_abies_miR160a_stem-loop_106
          Length = 106

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tgtgcctggctccctgtatgcca 33
          |||||||||||||||||||||||
Sbjct: 12 tgtgcctggctccctgtatgcca 34


>vvi-MIR160c_MI0006498_Vitis_vinifera_miR160c_stem-loop_106
          Length = 106

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tgtgcctggctccctgtatgcca 33
          |||||||||||||||||||||||
Sbjct: 9  tgtgcctggctccctgtatgcca 31


>bdi-MIR160c_MI0018100_Brachypodium_distachyon_miR160c_stem-
          loop_148
          Length = 148

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tgtgcctggctccctgtatgcca 33
          |||||||||||||||||||||||
Sbjct: 29 tgtgcctggctccctgtatgcca 51


>osa-MIR160a_MI0000663_Oryza_sativa_miR160a_stem-loop_88
          Length = 88

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tgtgcctggctccctgtatgcca 33
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgcca 24


>zma-MIR160b_MI0001468_Zea_mays_miR160b_stem-loop_121
          Length = 121

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tgtgcctggctccctgtatgcca 33
          |||||||||||||||||||||||
Sbjct: 19 tgtgcctggctccctgtatgcca 41


>smo-MIR160a_MI0006051_Selaginella_moellendorffii_miR160a_stem-
          loop_106
          Length = 106

 Score = 44.1 bits (22), Expect = 8e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 13 tgcctggctccctgtatgccat 34
          ||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccat 32


>bdi-MIR160b_MI0018093_Brachypodium_distachyon_miR160b_stem-
          loop_146
          Length = 146

 Score = 44.1 bits (22), Expect = 8e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 gtgcctggctccctgtatgcca 33
          ||||||||||||||||||||||
Sbjct: 30 gtgcctggctccctgtatgcca 51


>osa-MIR160b_MI0000664_Oryza_sativa_miR160b_stem-loop_139
          Length = 139

 Score = 44.1 bits (22), Expect = 8e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 gtgcctggctccctgtatgcca 33
          ||||||||||||||||||||||
Sbjct: 29 gtgcctggctccctgtatgcca 50


>aly-MIR160b_MI0014522_Arabidopsis_lyrata_miR160b_stem-loop_125
          Length = 125

 Score = 44.1 bits (22), Expect = 8e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 gtgcctggctccctgtatgcca 33
          ||||||||||||||||||||||
Sbjct: 20 gtgcctggctccctgtatgcca 41


>zma-MIR160a_MI0001465_Zea_mays_miR160a_stem-loop_104
          Length = 104

 Score = 44.1 bits (22), Expect = 8e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 gtgcctggctccctgtatgcca 33
          ||||||||||||||||||||||
Sbjct: 9  gtgcctggctccctgtatgcca 30


>ath-MIR160b_MI0000191_Arabidopsis_thaliana_miR160b_stem-loop_89
          Length = 89

 Score = 44.1 bits (22), Expect = 8e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 gtgcctggctccctgtatgcca 33
          ||||||||||||||||||||||
Sbjct: 4  gtgcctggctccctgtatgcca 25


>ppt-MIR160e_MI0005901_Physcomitrella_patens_miR160e_stem-loop_138
          Length = 138

 Score = 44.1 bits (22), Expect = 8e-06
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 13 tgcctggctccctgtatgccatttgc 38
          ||||||||||||||||||||| ||||
Sbjct: 30 tgcctggctccctgtatgccacttgc 55


>pab-MIR160b_MI0016117_Picea_abies_miR160b_stem-loop_116
          Length = 116

 Score = 44.1 bits (22), Expect = 8e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 13 tgcctggctccctgtatgccat 34
          ||||||||||||||||||||||
Sbjct: 20 tgcctggctccctgtatgccat 41


>osa-MIR160d_MI0000666_Oryza_sativa_miR160d_stem-loop_142
          Length = 142

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 8  tgcctggctccctgtatgcca 28


>tae-MIR160_MI0006172_Triticum_aestivum_miR160_stem-loop_148
          Length = 148

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 22 tgcctggctccctgtatgcca 42


>ppt-MIR160a_MI0005655_Physcomitrella_patens_miR160a_stem-loop_99
          Length = 99

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31


>zma-MIR160e_MI0001479_Zea_mays_miR160e_stem-loop_94
          Length = 94

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 9  tgcctggctccctgtatgcca 29


>rco-MIR160b_MI0013380_Ricinus_communis_miR160b_stem-loop_96
          Length = 96

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 6  tgcctggctccctgtatgcca 26


>ath-MIR160c_MI0000192_Arabidopsis_thaliana_miR160c_stem-loop_89
          Length = 89

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 5  tgcctggctccctgtatgcca 25


>far-MIR160_MI0016604_Festuca_arundinacea_miR160_stem-loop_148
          Length = 148

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 53 tgcctggctccctgtatgcca 73


>bdi-MIR160a_MI0018086_Brachypodium_distachyon_miR160a_stem-
          loop_175
          Length = 175

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 32 tgcctggctccctgtatgcca 52


>aly-MIR160c_MI0014523_Arabidopsis_lyrata_miR160c_stem-loop_119
          Length = 119

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 24 tgcctggctccctgtatgcca 44


>sbi-MIR160c_MI0001509_Sorghum_bicolor_miR160c_stem-loop_83
          Length = 83

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgcca 21


>mdm-MIR160a_MI0023004_83
          Length = 83

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 3  tgcctggctccctgtatgcca 23


>smo-MIR160b_MI0006052_Selaginella_moellendorffii_miR160b_stem-
          loop_108
          Length = 108

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgcca 33


>sbi-MIR160e_MI0001511_Sorghum_bicolor_miR160e_stem-loop_95
          Length = 95

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgcca 21


>sbi-MIR160d_MI0001507_Sorghum_bicolor_miR160d_stem-loop_100
          Length = 100

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgcca 21


>sbi-MIR160b_MI0001510_Sorghum_bicolor_miR160b_stem-loop_82
          Length = 82

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgcca 21


>mdm-MIR160b_MI0023005_89
          Length = 89

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgcca 24


>mdm-MIR160d_MI0023007_89
          Length = 89

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgcca 24


>zma-MIR160d_MI0001467_Zea_mays_miR160d_stem-loop_142
          Length = 142

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41


>ppt-MIR160f_MI0005902_Physcomitrella_patens_miR160f_stem-loop_138
          Length = 138

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgcca 50


>ptc-MIR160a_MI0002201_Populus_trichocarpa_miR160a_stem-loop_102
          Length = 102

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31


>ptc-MIR160d_MI0002204_Populus_trichocarpa_miR160d_stem-loop_103
          Length = 103

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31


>zma-MIR160g_MI0013192_Zea_mays_miR160g_stem-loop_86
          Length = 86

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 2  tgcctggctccctgtatgcca 22


>sbi-MIR160a_MI0001508_Sorghum_bicolor_miR160a_stem-loop_84
          Length = 84

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 13 tgcctggctccctgtatgcca 33
          |||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgcca 21


>ppt-MIR160i_MI0005905_Physcomitrella_patens_miR160i_stem-loop_139
          Length = 139

 Score = 40.1 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 14 gcctggctccctgtatgcca 33
          ||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgcca 50


>zma-MIR160f_MI0001848_Zea_mays_miR160f_stem-loop_116
          Length = 116

 Score = 40.1 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 13 tgcctggctccctgtatgcc 32
          ||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcc 40


>ppt-MIR160b_MI0005656_Physcomitrella_patens_miR160b_stem-loop_103
          Length = 103

 Score = 40.1 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 14 gcctggctccctgtatgcca 33
          ||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31


>osa-MIR160e_MI0001100_Oryza_sativa_miR160e_stem-loop_114
          Length = 114

 Score = 40.1 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 13 tgcctggctccctgtatgcc 32
          ||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcc 30


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.