(160 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR535d_MI0023131_95                                              188   3e-49
mdm-MIR535a_MI0023128_95                                              145   5e-36
mdm-MIR535b_MI0023129_95                                              139   3e-34
mdm-MIR535c_MI0023130_83                                              109   3e-25
vvi-MIR535a_MI0006580_Vitis_vinifera_miR535a_stem-loop_101             42   5e-05
vvi-MIR535b_MI0006581_Vitis_vinifera_miR535b_stem-loop_101             42   5e-05
rco-MIR535_MI0013431_Ricinus_communis_miR535_stem-loop_91              42   5e-05
ppt-MIR535b_MI0003503_Physcomitrella_patens_miR535b_stem-loop_81       38   8e-04
ppt-MIR535c_MI0003504_Physcomitrella_patens_miR535c_stem-loop_81       38   8e-04
ppt-MIR535a_MI0003502_Physcomitrella_patens_miR535a_stem-loop_135      38   8e-04

>mdm-MIR535d_MI0023131_95
          Length = 95

 Score =  188 bits (95), Expect = 3e-49
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                       
Query: 33  gatgttgtgtgacgacgagagagagcacgcttgtcatcacccatgaaaggatcatggttg 92
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatgttgtgtgacgacgagagagagcacgcttgtcatcacccatgaaaggatcatggttg 60

                                              
Query: 93  tttacgggcgtgctctttcttgttgtcataaagtc 127
           |||||||||||||||||||||||||||||||||||
Sbjct: 61  tttacgggcgtgctctttcttgttgtcataaagtc 95


>mdm-MIR535a_MI0023128_95
          Length = 95

 Score =  145 bits (73), Expect = 5e-36
 Identities = 85/89 (95%)
 Strand = Plus / Plus

                                                                       
Query: 33  gatgttgtgtgacgacgagagagagcacgcttgtcatcacccatgaaaggatcatggttg 92
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1   gatgttgtgtgacaacgagagagagcacgcttgtcatcacgcatgaaaggatcatggttg 60

                                        
Query: 93  tttacgggcgtgctctttcttgttgtcat 121
           ||||||||||||| || ||||||||||||
Sbjct: 61  tttacgggcgtgccctctcttgttgtcat 89


>mdm-MIR535b_MI0023129_95
          Length = 95

 Score =  139 bits (70), Expect = 3e-34
 Identities = 85/90 (94%)
 Strand = Plus / Plus

                                                                       
Query: 33  gatgttgtgtgacgacgagagagagcacgcttgtcatcacccatgaaaggatcatggttg 92
           ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1   gatgttgtgtgacaaggagagagagcacgcttgtcatcacccatgaacggatcatggttg 60

                                         
Query: 93  tttacgggcgtgctctttcttgttgtcata 122
           |||||||||||||||| |||| ||||||||
Sbjct: 61  tttacgggcgtgctctctcttcttgtcata 90


>mdm-MIR535c_MI0023130_83
          Length = 83

 Score =  109 bits (55), Expect = 3e-25
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                       
Query: 40  tgtgacgacgagagagagcacgcttgtcatcacccatgaaaggatcatggttgtttacgg 99
           |||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 1   tgtgacaaggagagagagcacgcttgtcatcacccatgaacggatcatggttgtttacag 60

                                  
Query: 100 gcgtgctctttcttgttgtcata 122
           | ||||||| |||| ||||||||
Sbjct: 61  gtgtgctctctcttcttgtcata 83


>vvi-MIR535a_MI0006580_Vitis_vinifera_miR535a_stem-loop_101
          Length = 101

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                       
Query: 42  tgacgacgagagagagcacgcttgtcatcacccatgaaaggatcatggttgtttacgggc 101
           |||| ||||||||||||||||| |||| ||  ||||  |||| ||||  ||| ||| |||
Sbjct: 11  tgacaacgagagagagcacgctagtcagcattcatgcgaggaacatgactgtgtacaggc 70

                                
Query: 102 gtgctctttcttgttgtcata 122
           ||||||| ||| | |||||||
Sbjct: 71  gtgctctctctcgctgtcata 91


>vvi-MIR535b_MI0006581_Vitis_vinifera_miR535b_stem-loop_101
          Length = 101

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                       
Query: 42  tgacgacgagagagagcacgcttgtcatcacccatgaaaggatcatggttgtttacgggc 101
           |||| ||||||||||||||||| |||| ||  ||||  |||| ||||  ||| ||| |||
Sbjct: 11  tgacaacgagagagagcacgctagtcagcattcatgcgaggaacatgactgtgtacaggc 70

                                
Query: 102 gtgctctttcttgttgtcata 122
           ||||||| ||| | |||||||
Sbjct: 71  gtgctctctctcgctgtcata 91


>rco-MIR535_MI0013431_Ricinus_communis_miR535_stem-loop_91
          Length = 91

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 42 tgacgacgagagagagcacgcttgt 66
          |||| ||||||||||||||||||||
Sbjct: 6  tgacaacgagagagagcacgcttgt 30


>ppt-MIR535b_MI0003503_Physcomitrella_patens_miR535b_stem-loop_81
          Length = 81

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 41 gtgacgacgagagagagcacgct 63
          ||||| |||||||||||||||||
Sbjct: 1  gtgacaacgagagagagcacgct 23


>ppt-MIR535c_MI0003504_Physcomitrella_patens_miR535c_stem-loop_81
          Length = 81

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 41 gtgacgacgagagagagcacgct 63
          ||||| |||||||||||||||||
Sbjct: 1  gtgacaacgagagagagcacgct 23


>ppt-MIR535a_MI0003502_Physcomitrella_patens_miR535a_stem-loop_135
          Length = 135

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 41 gtgacgacgagagagagcacgct 63
          ||||| |||||||||||||||||
Sbjct: 26 gtgacaacgagagagagcacgct 48


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.