(146 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR171b_MI0023043_93                                              133   2e-32
mdm-MIR171a_MI0023042_87                                              115   4e-27
vvi-MIR171b_MI0006537_Vitis_vinifera_miR171b_stem-loop_99              58   8e-10
mtr-MIR171b_MI0005580_Medicago_truncatula_miR171b_stem-loop_94         52   5e-08
ctr-MIR171_MI0013308_Citrus_trifoliata_miR171_stem-loop_371            48   7e-07
sbi-MIR171h_MI0010881_Sorghum_bicolor_miR171h_stem-loop_81             42   4e-05
osa-MIR171i_MI0001155_Oryza_sativa_miR171i_stem-loop_120               42   4e-05
zma-MIR171l_MI0013206_Zea_mays_miR171l_stem-loop_78                    40   2e-04
zma-MIR171m_MI0013207_Zea_mays_miR171m_stem-loop_82                    40   2e-04

>mdm-MIR171b_MI0023043_93
          Length = 93

 Score =  133 bits (67), Expect = 2e-32
 Identities = 82/87 (94%)
 Strand = Plus / Plus

                                                                       
Query: 32  aaggtattggcgcgcctcaatttgaacgcgtggctaatatcggagacttagccatacgat 91
           ||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct: 4   aaggtattgacgcgcctcaatttgaacgcgtggctaatattggagacttaaccatgcgat 63

                                      
Query: 92  tctaattgagccgcgtcaatatctcct 118
           ||| |||||||||||||||||||||||
Sbjct: 64  tctgattgagccgcgtcaatatctcct 90


>mdm-MIR171a_MI0023042_87
          Length = 87

 Score =  115 bits (58), Expect = 4e-27
 Identities = 79/86 (91%)
 Strand = Plus / Plus

                                                                       
Query: 32  aaggtattggcgcgcctcaatttgaacgcgtggctaatatcggagacttagccatacgat 91
           ||||||||| |||||||||||||||||| |||||| |||| ||||||||| |||| ||||
Sbjct: 2   aaggtattgacgcgcctcaatttgaacgrgtggctyatattggagacttaaccatgcgat 61

                                     
Query: 92  tctaattgagccgcgtcaatatctcc 117
           ||| ||||||||||||||||||||||
Sbjct: 62  tctgattgagccgcgtcaatatctcc 87


>vvi-MIR171b_MI0006537_Vitis_vinifera_miR171b_stem-loop_99
          Length = 99

 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 96  attgagccgcgtcaatatctccttttgca 124
           |||||||||||||||||||||||||||||
Sbjct: 71  attgagccgcgtcaatatctccttttgca 99


>mtr-MIR171b_MI0005580_Medicago_truncatula_miR171b_stem-loop_94
          Length = 94

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 32 aaggtattggcgcgcctcaatttgaa 57
          ||||||||||||||||||||||||||
Sbjct: 4  aaggtattggcgcgcctcaatttgaa 29



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  attgagccgcgtcaatatct 115
           ||||||||||||||||||||
Sbjct: 71  attgagccgcgtcaatatct 90


>ctr-MIR171_MI0013308_Citrus_trifoliata_miR171_stem-loop_371
          Length = 371

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 96  attgagccgcgtcaatatctcctt 119
           ||||||||||||||||||||||||
Sbjct: 103 attgagccgcgtcaatatctcctt 126



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 32 aaggtattggcgcgcctcaattt 54
          |||||||||||||||||||||||
Sbjct: 40 aaggtattggcgcgcctcaattt 62


>sbi-MIR171h_MI0010881_Sorghum_bicolor_miR171h_stem-loop_81
          Length = 81

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                           
Query: 34 ggtattggcgcgcctcaatttgaacgcgtggct 66
          |||||||||||||||||||  ||| ||||||||
Sbjct: 1  ggtattggcgcgcctcaatccgaaggcgtggct 33



 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 96  attgagccgcgtcaatatctc 116
           |||||||||||||||||||||
Sbjct: 61  attgagccgcgtcaatatctc 81


>osa-MIR171i_MI0001155_Oryza_sativa_miR171i_stem-loop_120
          Length = 120

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 96  attgagccgcgtcaatatctc 116
           |||||||||||||||||||||
Sbjct: 90  attgagccgcgtcaatatctc 110


>zma-MIR171l_MI0013206_Zea_mays_miR171l_stem-loop_78
          Length = 78

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  attgagccgcgtcaatatct 115
           ||||||||||||||||||||
Sbjct: 59  attgagccgcgtcaatatct 78


>zma-MIR171m_MI0013207_Zea_mays_miR171m_stem-loop_82
          Length = 82

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                          
Query: 35 gtattggcgcgcctcaatttgaacgcgtggct 66
          ||||||||||||||||||  ||| ||||||||
Sbjct: 1  gtattggcgcgcctcaatccgaaggcgtggct 32



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  attgagccgcgtcaatatct 115
           ||||||||||||||||||||
Sbjct: 63  attgagccgcgtcaatatct 82


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.