(312 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tcc-MIR169b_MI0017476_Theobroma_cacao_miR169b_stem-loop_193            60   4e-10
ptc-MIR169f_MI0002256_Populus_trichocarpa_miR169f_stem-loop_239        52   1e-07
vvi-MIR169a_MI0006521_Vitis_vinifera_miR169a_stem-loop_124             50   4e-07
tcc-MIR169k_MI0017485_Theobroma_cacao_miR169k_stem-loop_132            50   4e-07
aqc-MIR169c_MI0012080_Aquilegia_caerulea_miR169c_stem-loop_111         50   4e-07
aly-MIR169b_MI0014546_Arabidopsis_lyrata_miR169b_stem-loop_173         50   4e-07
vvi-MIR169k_MI0006529_Vitis_vinifera_miR169k_stem-loop_122             50   4e-07
vvi-MIR169j_MI0006528_Vitis_vinifera_miR169j_stem-loop_122             50   4e-07
gma-MIR169b_MI0007211_Glycine_max_miR169b_stem-loop_183                50   4e-07
ath-MIR169b_MI0000976_Arabidopsis_thaliana_miR169b_stem-loop_181       50   4e-07
sly-MIR169a_MI0008361_Solanum_lycopersicum_miR169a_stem-loop_149       48   2e-06
vvi-MIR169w_MI0007948_Vitis_vinifera_miR169w_stem-loop_143             48   2e-06
gma-MIR169g_MI0017837_Glycine_max_miR169g_stem-loop_130                48   2e-06
vvi-MIR169c_MI0006523_Vitis_vinifera_miR169c_stem-loop_90              48   2e-06
gma-MIR169m_MI0018665_Glycine_max_miR169m_stem-loop_123                48   2e-06
gma-MIR169a_MI0001791_Glycine_max_miR169a_stem-loop_121                46   6e-06
bdi-MIR169c_MI0018126_Brachypodium_distachyon_miR169c_stem-loop_151    46   6e-06
osa-MIR169p_MI0001131_Oryza_sativa_miR169p_stem-loop_126               46   6e-06
bdi-MIR169f_MI0018160_Brachypodium_distachyon_miR169f_stem-loop_151    46   6e-06
zma-MIR169c_MI0001826_Zea_mays_miR169c_stem-loop_134                   46   6e-06
mtr-MIR169j_MI0005625_Medicago_truncatula_miR169j_stem-loop_77         46   6e-06
tcc-MIR169l_MI0017486_Theobroma_cacao_miR169l_stem-loop_122            46   6e-06
ptc-MIR169d_MI0002254_Populus_trichocarpa_miR169d_stem-loop_111        46   6e-06
osa-MIR169c_MI0001118_Oryza_sativa_miR169c_stem-loop_112               46   6e-06
mtr-MIR169g_MI0005604_Medicago_truncatula_miR169g_stem-loop_211        46   6e-06
osa-MIR169b_MI0001117_Oryza_sativa_miR169b_stem-loop_128               46   6e-06
gma-MIR169f_MI0017836_Glycine_max_miR169f_stem-loop_170                46   6e-06
vun-MIR169_MI0019572_Vigna_unguiculata_miR169_stem-loop_110            46   6e-06
ptc-MIR169g_MI0002257_Populus_trichocarpa_miR169g_stem-loop_106        46   6e-06
mdm-MIR169a_MI0023038_158                                              46   6e-06
vvi-MIR169s_MI0006533_Vitis_vinifera_miR169s_stem-loop_99              46   6e-06
tcc-MIR169a_MI0017475_Theobroma_cacao_miR169a_stem-loop_147            44   3e-05
bdi-MIR169a_MI0018120_Brachypodium_distachyon_miR169a_stem-loop_181    44   3e-05
mtr-MIR169a_MI0001741_Medicago_truncatula_miR169a_stem-loop_121        44   3e-05
sly-MIR169c_MI0008363_Solanum_lycopersicum_miR169c_stem-loop_147       44   3e-05
zma-MIR169r_MI0013205_Zea_mays_miR169r_stem-loop_126                   44   3e-05
tcc-MIR169c_MI0017477_Theobroma_cacao_miR169c_stem-loop_142            44   3e-05
ptc-MIR169c_MI0002253_Populus_trichocarpa_miR169c_stem-loop_102        44   3e-05
vvi-MIR169g_MI0006527_Vitis_vinifera_miR169g_stem-loop_121             44   3e-05
ptc-MIR169s_MI0002269_Populus_trichocarpa_miR169s_stem-loop_120        44   3e-05
tcc-MIR169e_MI0017479_Theobroma_cacao_miR169e_stem-loop_147            44   3e-05
bna-MIR169a_MI0006457_Brassica_napus_miR169a_stem-loop_132             44   3e-05
ptc-MIR169b_MI0002252_Populus_trichocarpa_miR169b_stem-loop_113        44   3e-05
bna-MIR169b_MI0006458_Brassica_napus_miR169b_stem-loop_188             44   3e-05
zma-MIR169b_MI0001474_Zea_mays_miR169b_stem-loop_156                   44   3e-05
sbi-MIR169b_MI0001515_Sorghum_bicolor_miR169b_stem-loop_102            44   3e-05
ath-MIR169a_MI0000212_Arabidopsis_thaliana_miR169a_stem-loop_226       44   3e-05
ptc-MIR169a_MI0002245_Populus_trichocarpa_miR169a_stem-loop_165        44   3e-05
osa-MIR169a_MI0000679_Oryza_sativa_miR169a_stem-loop_173               44   3e-05
mtr-MIR169b_MI0001742_Medicago_truncatula_miR169b_stem-loop_121        44   3e-05
zma-MIR169a_MI0001473_Zea_mays_miR169a_stem-loop_130                   44   3e-05
vvi-MIR169f_MI0006526_Vitis_vinifera_miR169f_stem-loop_184             44   3e-05
aly-MIR169a_MI0014545_Arabidopsis_lyrata_miR169a_stem-loop_263         44   3e-05
ptc-MIR169e_MI0002255_Populus_trichocarpa_miR169e_stem-loop_166        44   3e-05
ptc-MIR169h_MI0002258_Populus_trichocarpa_miR169h_stem-loop_118        44   3e-05
rco-MIR169a_MI0013395_Ricinus_communis_miR169a_stem-loop_92            42   1e-04
gma-MIR169k_MI0018663_Glycine_max_miR169k_stem-loop_105                42   1e-04
aly-MIR169c_MI0014547_Arabidopsis_lyrata_miR169c_stem-loop_292         42   1e-04
sbi-MIR169k_MI0010876_Sorghum_bicolor_miR169k_stem-loop_97             42   1e-04
gma-MIR169l_MI0018664_Glycine_max_miR169l_stem-loop_114                42   1e-04
rco-MIR169b_MI0013396_Ricinus_communis_miR169b_stem-loop_93            42   1e-04
ath-MIR169c_MI0000977_Arabidopsis_thaliana_miR169c_stem-loop_411       42   1e-04
zma-MIR169p_MI0013203_Zea_mays_miR169p_stem-loop_65                    40   4e-04
ath-MIR169f_MI0000980_Arabidopsis_thaliana_miR169f_stem-loop_167       40   4e-04
sbi-MIR169j_MI0010875_Sorghum_bicolor_miR169j_stem-loop_123            40   4e-04
sbi-MIR169a_MI0001516_Sorghum_bicolor_miR169a_stem-loop_91             40   4e-04
gma-MIR169e_MI0016576_Glycine_max_miR169e_stem-loop_120                40   4e-04
aly-MIR169f_MI0014550_Arabidopsis_lyrata_miR169f_stem-loop_184         40   4e-04
vvi-MIR169p_MI0006531_Vitis_vinifera_miR169p_stem-loop_102             40   4e-04
bdi-MIR169b_MI0011574_Brachypodium_distachyon_miR169b_stem-loop_106    40   4e-04
mtr-MIR169d_MI0005578_Medicago_truncatula_miR169d_stem-loop_240        40   4e-04
mtr-MIR169e_MI0005579_Medicago_truncatula_miR169e_stem-loop_101        40   4e-04
tcc-MIR169m_MI0017487_Theobroma_cacao_miR169m_stem-loop_124            40   4e-04
osa-MIR169e_MI0001120_Oryza_sativa_miR169e_stem-loop_132               40   4e-04
gma-MIR169d_MI0016571_Glycine_max_miR169d_stem-loop_88                 40   4e-04
ssp-MIR169_MI0018180_Saccharum_ssp._miR169_stem-loop_146               40   4e-04
aly-MIR169g_MI0014551_Arabidopsis_lyrata_miR169g_stem-loop_202         40   4e-04
gma-MIR169h_MI0017912_Glycine_max_miR169h_stem-loop_151                40   4e-04
mtr-MIR169l_MI0005631_Medicago_truncatula_miR169l_stem-loop_240        40   4e-04
vvi-MIR169m_MI0006530_Vitis_vinifera_miR169m_stem-loop_102             40   4e-04
vvi-MIR169n_MI0007944_Vitis_vinifera_miR169n_stem-loop_101             40   4e-04
ath-MIR169g_MI0000981_Arabidopsis_thaliana_miR169g_stem-loop_379       40   4e-04
sbi-MIR169e_MI0010873_Sorghum_bicolor_miR169e_stem-loop_109            40   4e-04
vvi-MIR169q_MI0007946_Vitis_vinifera_miR169q_stem-loop_97              40   4e-04
mtr-MIR169m_MI0005630_Medicago_truncatula_miR169m_stem-loop_100        40   4e-04

>tcc-MIR169b_MI0017476_Theobroma_cacao_miR169b_stem-loop_193
          Length = 193

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 35 tgtgctgcagccaaggatgacttgccggaa 64
          ||||||||||||||||||||||||||||||
Sbjct: 14 tgtgctgcagccaaggatgacttgccggaa 43


>ptc-MIR169f_MI0002256_Populus_trichocarpa_miR169f_stem-loop_239
          Length = 239

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 35 tgtgctgcagccaaggatgacttgccggaa 64
          |||| |||||||||||||||||||||||||
Sbjct: 4  tgtggtgcagccaaggatgacttgccggaa 33


>vvi-MIR169a_MI0006521_Vitis_vinifera_miR169a_stem-loop_124
          Length = 124

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 40 tgcagccaaggatgacttgccggaa 64
          |||||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccggaa 35


>tcc-MIR169k_MI0017485_Theobroma_cacao_miR169k_stem-loop_132
          Length = 132

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 34 gtgtgctgcagccaaggatgacttgccgg 62
          ||||| |||||||||||||||||||||||
Sbjct: 13 gtgtggtgcagccaaggatgacttgccgg 41


>aqc-MIR169c_MI0012080_Aquilegia_caerulea_miR169c_stem-loop_111
          Length = 111

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 40 tgcagccaaggatgacttgccggaa 64
          |||||||||||||||||||||||||
Sbjct: 3  tgcagccaaggatgacttgccggaa 27


>aly-MIR169b_MI0014546_Arabidopsis_lyrata_miR169b_stem-loop_173
          Length = 173

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 40 tgcagccaaggatgacttgccggaa 64
          |||||||||||||||||||||||||
Sbjct: 44 tgcagccaaggatgacttgccggaa 68


>vvi-MIR169k_MI0006529_Vitis_vinifera_miR169k_stem-loop_122
          Length = 122

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 40 tgcagccaaggatgacttgccggaa 64
          |||||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccggaa 35


>vvi-MIR169j_MI0006528_Vitis_vinifera_miR169j_stem-loop_122
          Length = 122

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 40 tgcagccaaggatgacttgccggaa 64
          |||||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccggaa 35


>gma-MIR169b_MI0007211_Glycine_max_miR169b_stem-loop_183
          Length = 183

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 37 tgctgcagccaaggatgacttgccg 61
          |||||||||||||||||||||||||
Sbjct: 6  tgctgcagccaaggatgacttgccg 30


>ath-MIR169b_MI0000976_Arabidopsis_thaliana_miR169b_stem-loop_181
          Length = 181

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 40 tgcagccaaggatgacttgccggaa 64
          |||||||||||||||||||||||||
Sbjct: 41 tgcagccaaggatgacttgccggaa 65


>sly-MIR169a_MI0008361_Solanum_lycopersicum_miR169a_stem-loop_149
          Length = 149

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 40 tgcagccaaggatgacttgccgga 63
          ||||||||||||||||||||||||
Sbjct: 39 tgcagccaaggatgacttgccgga 62


>vvi-MIR169w_MI0007948_Vitis_vinifera_miR169w_stem-loop_143
          Length = 143

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 35 tgtgctgcagccaaggatgacttgccgg 62
          |||| |||||||||||||||||||||||
Sbjct: 6  tgtggtgcagccaaggatgacttgccgg 33


>gma-MIR169g_MI0017837_Glycine_max_miR169g_stem-loop_130
          Length = 130

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 40 tgcagccaaggatgacttgccgga 63
          ||||||||||||||||||||||||
Sbjct: 9  tgcagccaaggatgacttgccgga 32


>vvi-MIR169c_MI0006523_Vitis_vinifera_miR169c_stem-loop_90
          Length = 90

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 40 tgcagccaaggatgacttgccgga 63
          ||||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccgga 34



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 267 ccggcaagttgtccctggctacat 290
           |||||||||||||| |||||||||
Sbjct: 56  ccggcaagttgtccttggctacat 79


>gma-MIR169m_MI0018665_Glycine_max_miR169m_stem-loop_123
          Length = 123

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 40 tgcagccaaggatgacttgccgga 63
          ||||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccgga 34


>gma-MIR169a_MI0001791_Glycine_max_miR169a_stem-loop_121
          Length = 121

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 tgcagccaaggatgacttgccgg 62
          |||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccgg 41


>bdi-MIR169c_MI0018126_Brachypodium_distachyon_miR169c_stem-
          loop_151
          Length = 151

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 tgcagccaaggatgacttgccgg 62
          |||||||||||||||||||||||
Sbjct: 31 tgcagccaaggatgacttgccgg 53


>osa-MIR169p_MI0001131_Oryza_sativa_miR169p_stem-loop_126
          Length = 126

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 40  tgcagccaaggatgacttgccgg 62
           |||||||||||||||||||||||
Sbjct: 118 tgcagccaaggatgacttgccgg 96


>bdi-MIR169f_MI0018160_Brachypodium_distachyon_miR169f_stem-
          loop_151
          Length = 151

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 tgcagccaaggatgacttgccgg 62
          |||||||||||||||||||||||
Sbjct: 31 tgcagccaaggatgacttgccgg 53


>zma-MIR169c_MI0001826_Zea_mays_miR169c_stem-loop_134
          Length = 134

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 tgcagccaaggatgacttgccgg 62
          |||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccgg 41


>mtr-MIR169j_MI0005625_Medicago_truncatula_miR169j_stem-loop_77
          Length = 77

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 tgcagccaaggatgacttgccgg 62
          |||||||||||||||||||||||
Sbjct: 4  tgcagccaaggatgacttgccgg 26


>tcc-MIR169l_MI0017486_Theobroma_cacao_miR169l_stem-loop_122
          Length = 122

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 tgcagccaaggatgacttgccgg 62
          |||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccgg 41


>ptc-MIR169d_MI0002254_Populus_trichocarpa_miR169d_stem-loop_111
          Length = 111

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 tgcagccaaggatgacttgccgg 62
          |||||||||||||||||||||||
Sbjct: 9  tgcagccaaggatgacttgccgg 31


>osa-MIR169c_MI0001118_Oryza_sativa_miR169c_stem-loop_112
          Length = 112

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 tgcagccaaggatgacttgccgg 62
          |||||||||||||||||||||||
Sbjct: 9  tgcagccaaggatgacttgccgg 31


>mtr-MIR169g_MI0005604_Medicago_truncatula_miR169g_stem-loop_211
          Length = 211

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 tgcagccaaggatgacttgccgg 62
          |||||||||||||||||||||||
Sbjct: 4  tgcagccaaggatgacttgccgg 26


>osa-MIR169b_MI0001117_Oryza_sativa_miR169b_stem-loop_128
          Length = 128

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 tgcagccaaggatgacttgccgg 62
          |||||||||||||||||||||||
Sbjct: 9  tgcagccaaggatgacttgccgg 31


>gma-MIR169f_MI0017836_Glycine_max_miR169f_stem-loop_170
          Length = 170

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 tgcagccaaggatgacttgccgg 62
          |||||||||||||||||||||||
Sbjct: 30 tgcagccaaggatgacttgccgg 52


>vun-MIR169_MI0019572_Vigna_unguiculata_miR169_stem-loop_110
          Length = 110

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 tgcagccaaggatgacttgccgg 62
          |||||||||||||||||||||||
Sbjct: 13 tgcagccaaggatgacttgccgg 35


>ptc-MIR169g_MI0002257_Populus_trichocarpa_miR169g_stem-loop_106
          Length = 106

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 tgcagccaaggatgacttgccgg 62
          |||||||||||||||||||||||
Sbjct: 9  tgcagccaaggatgacttgccgg 31


>mdm-MIR169a_MI0023038_158
          Length = 158

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 tgcagccaaggatgacttgccgg 62
          |||||||||||||||||||||||
Sbjct: 40 tgcagccaaggatgacttgccgg 62


>vvi-MIR169s_MI0006533_Vitis_vinifera_miR169s_stem-loop_99
          Length = 99

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 tgcagccaaggatgacttgccgg 62
          |||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccgg 33



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 267 ccggcaagttgtccctggctacat 290
           |||||||||||| |||||||||||
Sbjct: 65  ccggcaagttgttcctggctacat 88


>tcc-MIR169a_MI0017475_Theobroma_cacao_miR169a_stem-loop_147
          Length = 147

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccg 40


>bdi-MIR169a_MI0018120_Brachypodium_distachyon_miR169a_stem-
          loop_181
          Length = 181

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 64 tgcagccaaggatgacttgccg 85


>mtr-MIR169a_MI0001741_Medicago_truncatula_miR169a_stem-loop_121
          Length = 121

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccg 40


>sly-MIR169c_MI0008363_Solanum_lycopersicum_miR169c_stem-loop_147
          Length = 147

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 39 tgcagccaaggatgacttgccg 60


>zma-MIR169r_MI0013205_Zea_mays_miR169r_stem-loop_126
          Length = 126

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 41 gcagccaaggatgacttgccgg 62
          ||||||||||||||||||||||
Sbjct: 1  gcagccaaggatgacttgccgg 22



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 267 ccggcaagttgtccctggctacat 290
           |||||||||||||| |||||||||
Sbjct: 103 ccggcaagttgtccttggctacat 126


>tcc-MIR169c_MI0017477_Theobroma_cacao_miR169c_stem-loop_142
          Length = 142

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccg 40


>ptc-MIR169c_MI0002253_Populus_trichocarpa_miR169c_stem-loop_102
          Length = 102

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 9  tgcagccaaggatgacttgccg 30


>vvi-MIR169g_MI0006527_Vitis_vinifera_miR169g_stem-loop_121
          Length = 121

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccg 32


>ptc-MIR169s_MI0002269_Populus_trichocarpa_miR169s_stem-loop_120
          Length = 120

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 42 cagccaaggatgacttgccggaagca 67
          ||||||||||||||||||||| ||||
Sbjct: 12 cagccaaggatgacttgccggcagca 37


>tcc-MIR169e_MI0017479_Theobroma_cacao_miR169e_stem-loop_147
          Length = 147

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccg 40



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 268 cggcaagttgtccctggctacatgt 292
           ||||||||||||| |||||||||||
Sbjct: 108 cggcaagttgtccttggctacatgt 132


>bna-MIR169a_MI0006457_Brassica_napus_miR169a_stem-loop_132
          Length = 132

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 17 tgcagccaaggatgacttgccg 38


>ptc-MIR169b_MI0002252_Populus_trichocarpa_miR169b_stem-loop_113
          Length = 113

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 9  tgcagccaaggatgacttgccg 30


>bna-MIR169b_MI0006458_Brassica_napus_miR169b_stem-loop_188
          Length = 188

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 16 tgcagccaaggatgacttgccg 37


>zma-MIR169b_MI0001474_Zea_mays_miR169b_stem-loop_156
          Length = 156

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccg 40


>sbi-MIR169b_MI0001515_Sorghum_bicolor_miR169b_stem-loop_102
          Length = 102

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 42 cagccaaggatgacttgccgga 63
          ||||||||||||||||||||||
Sbjct: 1  cagccaaggatgacttgccgga 22


>ath-MIR169a_MI0000212_Arabidopsis_thaliana_miR169a_stem-loop_226
          Length = 226

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 16 tgcagccaaggatgacttgccg 37


>ptc-MIR169a_MI0002245_Populus_trichocarpa_miR169a_stem-loop_165
          Length = 165

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 9  tgcagccaaggatgacttgccg 30


>osa-MIR169a_MI0000679_Oryza_sativa_miR169a_stem-loop_173
          Length = 173

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 36 tgcagccaaggatgacttgccg 57


>mtr-MIR169b_MI0001742_Medicago_truncatula_miR169b_stem-loop_121
          Length = 121

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccg 40


>zma-MIR169a_MI0001473_Zea_mays_miR169a_stem-loop_130
          Length = 130

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccg 40


>vvi-MIR169f_MI0006526_Vitis_vinifera_miR169f_stem-loop_184
          Length = 184

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccg 32


>aly-MIR169a_MI0014545_Arabidopsis_lyrata_miR169a_stem-loop_263
          Length = 263

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 40 tgcagccaaggatgacttgccg 61
          ||||||||||||||||||||||
Sbjct: 25 tgcagccaaggatgacttgccg 46


>ptc-MIR169e_MI0002255_Populus_trichocarpa_miR169e_stem-loop_166
          Length = 166

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 41 gcagccaaggatgacttgccgg 62
          ||||||||||||||||||||||
Sbjct: 10 gcagccaaggatgacttgccgg 31


>ptc-MIR169h_MI0002258_Populus_trichocarpa_miR169h_stem-loop_118
          Length = 118

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 42 cagccaaggatgacttgccggaagca 67
          ||||||||||||||||||||| ||||
Sbjct: 11 cagccaaggatgacttgccggcagca 36


>rco-MIR169a_MI0013395_Ricinus_communis_miR169a_stem-loop_92
          Length = 92

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 cagccaaggatgacttgccgg 62
          |||||||||||||||||||||
Sbjct: 6  cagccaaggatgacttgccgg 26


>gma-MIR169k_MI0018663_Glycine_max_miR169k_stem-loop_105
          Length = 105

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 40 tgcagccaaggatgacttgccggaa 64
          |||||||||| ||||||||||||||
Sbjct: 9  tgcagccaagaatgacttgccggaa 33


>aly-MIR169c_MI0014547_Arabidopsis_lyrata_miR169c_stem-loop_292
          Length = 292

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 cagccaaggatgacttgccgg 62
          |||||||||||||||||||||
Sbjct: 45 cagccaaggatgacttgccgg 65


>sbi-MIR169k_MI0010876_Sorghum_bicolor_miR169k_stem-loop_97
          Length = 97

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 cagccaaggatgacttgccgg 62
          |||||||||||||||||||||
Sbjct: 1  cagccaaggatgacttgccgg 21


>gma-MIR169l_MI0018664_Glycine_max_miR169l_stem-loop_114
          Length = 114

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 40 tgcagccaaggatgacttgccggaa 64
          |||||||||| ||||||||||||||
Sbjct: 9  tgcagccaagaatgacttgccggaa 33


>rco-MIR169b_MI0013396_Ricinus_communis_miR169b_stem-loop_93
          Length = 93

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 cagccaaggatgacttgccgg 62
          |||||||||||||||||||||
Sbjct: 6  cagccaaggatgacttgccgg 26


>ath-MIR169c_MI0000977_Arabidopsis_thaliana_miR169c_stem-loop_411
          Length = 411

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 42  cagccaaggatgacttgccgg 62
           |||||||||||||||||||||
Sbjct: 113 cagccaaggatgacttgccgg 133


>zma-MIR169p_MI0013203_Zea_mays_miR169p_stem-loop_65
          Length = 65

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 3  agccaaggatgacttgccgg 22


>ath-MIR169f_MI0000980_Arabidopsis_thaliana_miR169f_stem-loop_167
          Length = 167

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 34 agccaaggatgacttgccgg 53


>sbi-MIR169j_MI0010875_Sorghum_bicolor_miR169j_stem-loop_123
          Length = 123

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 4  agccaaggatgacttgccgg 23


>sbi-MIR169a_MI0001516_Sorghum_bicolor_miR169a_stem-loop_91
          Length = 91

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 42 cagccaaggatgacttgccg 61
          ||||||||||||||||||||
Sbjct: 1  cagccaaggatgacttgccg 20


>gma-MIR169e_MI0016576_Glycine_max_miR169e_stem-loop_120
          Length = 120

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 34 agccaaggatgacttgccgg 53


>aly-MIR169f_MI0014550_Arabidopsis_lyrata_miR169f_stem-loop_184
          Length = 184

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 43 agccaaggatgacttgccgg 62


>vvi-MIR169p_MI0006531_Vitis_vinifera_miR169p_stem-loop_102
          Length = 102

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccgg 32


>bdi-MIR169b_MI0011574_Brachypodium_distachyon_miR169b_stem-
          loop_106
          Length = 106

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 20 agccaaggatgacttgccgg 39


>mtr-MIR169d_MI0005578_Medicago_truncatula_miR169d_stem-loop_240
          Length = 240

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 7  agccaaggatgacttgccgg 26


>mtr-MIR169e_MI0005579_Medicago_truncatula_miR169e_stem-loop_101
          Length = 101

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 8  agccaaggatgacttgccgg 27


>tcc-MIR169m_MI0017487_Theobroma_cacao_miR169m_stem-loop_124
          Length = 124

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 23 agccaaggatgacttgccgg 42


>osa-MIR169e_MI0001120_Oryza_sativa_miR169e_stem-loop_132
          Length = 132

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccgg 31


>gma-MIR169d_MI0016571_Glycine_max_miR169d_stem-loop_88
          Length = 88

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccgg 35


>ssp-MIR169_MI0018180_Saccharum_ssp._miR169_stem-loop_146
          Length = 146

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 3  agccaaggatgacttgccgg 22


>aly-MIR169g_MI0014551_Arabidopsis_lyrata_miR169g_stem-loop_202
          Length = 202

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 65 agccaaggatgacttgccgg 84


>gma-MIR169h_MI0017912_Glycine_max_miR169h_stem-loop_151
          Length = 151

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 10 agccaaggatgacttgccgg 29


>mtr-MIR169l_MI0005631_Medicago_truncatula_miR169l_stem-loop_240
          Length = 240

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 7  agccaaggatgacttgccgg 26


>vvi-MIR169m_MI0006530_Vitis_vinifera_miR169m_stem-loop_102
          Length = 102

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccgg 32


>vvi-MIR169n_MI0007944_Vitis_vinifera_miR169n_stem-loop_101
          Length = 101

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccgg 32


>ath-MIR169g_MI0000981_Arabidopsis_thaliana_miR169g_stem-loop_379
          Length = 379

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 43  agccaaggatgacttgccgg 62
           ||||||||||||||||||||
Sbjct: 146 agccaaggatgacttgccgg 165


>sbi-MIR169e_MI0010873_Sorghum_bicolor_miR169e_stem-loop_109
          Length = 109

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 2  agccaaggatgacttgccgg 21


>vvi-MIR169q_MI0007946_Vitis_vinifera_miR169q_stem-loop_97
          Length = 97

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccgg 32


>mtr-MIR169m_MI0005630_Medicago_truncatula_miR169m_stem-loop_100
          Length = 100

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 agccaaggatgacttgccgg 62
          ||||||||||||||||||||
Sbjct: 7  agccaaggatgacttgccgg 26


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.