(113 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR395h_MI0023091_104                                             129   2e-31
mdm-MIR395i_MI0023092_104                                             117   7e-28
mdm-MIR395g_MI0023090_152                                             117   7e-28
mdm-MIR395d_MI0023087_142                                              62   4e-11
rco-MIR395d_MI0013416_Ricinus_communis_miR395d_stem-loop_87            48   5e-07
tcc-MIR395a_MI0017509_Theobroma_cacao_miR395a_stem-loop_123            48   5e-07
vvi-MIR395h_MI0006563_Vitis_vinifera_miR395h_stem-loop_92              44   9e-06
vvi-MIR395d_MI0006559_Vitis_vinifera_miR395d_stem-loop_86              44   9e-06
sly-MIR395b_MI0008370_Solanum_lycopersicum_miR395b_stem-loop_101       44   9e-06
mdm-MIR395b_MI0023085_137                                              44   9e-06
vvi-MIR395k_MI0006566_Vitis_vinifera_miR395k_stem-loop_92              44   9e-06
vvi-MIR395c_MI0006558_Vitis_vinifera_miR395c_stem-loop_92              44   9e-06
vvi-MIR395e_MI0006560_Vitis_vinifera_miR395e_stem-loop_92              44   9e-06
sly-MIR395a_MI0008369_Solanum_lycopersicum_miR395a_stem-loop_199       42   3e-05
ptc-MIR395b_MI0002316_Populus_trichocarpa_miR395b_stem-loop_98         40   1e-04
rco-MIR395a_MI0013413_Ricinus_communis_miR395a_stem-loop_74            38   5e-04
rco-MIR395e_MI0013417_Ricinus_communis_miR395e_stem-loop_74            38   5e-04
rco-MIR395c_MI0013415_Ricinus_communis_miR395c_stem-loop_82            38   5e-04

>mdm-MIR395h_MI0023091_104
          Length = 104

 Score =  129 bits (65), Expect = 2e-31
 Identities = 93/103 (90%)
 Strand = Plus / Plus

                                                                       
Query: 7   caggtgtcaccaagagttcccttgaccacttcattgggaaattgccgtttttgcaactat 66
           |||||||||||||||||||||| ||||||||||||||||||| | |  ||||||||||||
Sbjct: 2   caggtgtcaccaagagttccctwgaccacttcattgggaaatagtctattttgcaactat 61

                                                      
Query: 67  atatcctgcggaagtgtttgggagaactcctgttggcatttga 109
           ||||||| | |||||||||||| |||||||||| | |||||||
Sbjct: 62  atatcctactgaagtgtttgggggaactcctgtcgacatttga 104


>mdm-MIR395i_MI0023092_104
          Length = 104

 Score =  117 bits (59), Expect = 7e-28
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                       
Query: 7   caggtgtcaccaagagttcccttgaccacttcattgggaaattgccgtttttgcaactat 66
           |||||||||||||||||||||||||||||||||||||||||| | |  ||||||||||| 
Sbjct: 2   caggtgtcaccaagagttcccttgaccacttcattgggaaatagtctcttttgcaactaa 61

                                                      
Query: 67  atatcctgcggaagtgtttgggagaactcctgttggcatttga 109
           ||||||| | |||||||||||| ||||||| |  |||||||||
Sbjct: 62  atatcctactgaagtgtttgggggaactcccggcggcatttga 104


>mdm-MIR395g_MI0023090_152
          Length = 152

 Score =  117 bits (59), Expect = 7e-28
 Identities = 95/107 (88%)
 Strand = Plus / Plus

                                                                       
Query: 7   caggtgtcaccaagagttcccttgaccacttcattgggaaattgccgtttttgcaactat 66
           ||||||| |||||||||||||||||||||||||||||||||| | |  ||||| ||||||
Sbjct: 27  caggtgttaccaagagttcccttgaccacttcattgggaaatagtctcttttgtaactat 86

                                                          
Query: 67  atatcctgcggaagtgtttgggagaactcctgttggcatttgatttt 113
           | ||||| | |||||||||||| ||||||||| | ||||||||||||
Sbjct: 87  aaatcctactgaagtgtttgggggaactcctggttgcatttgatttt 133


>mdm-MIR395d_MI0023087_142
          Length = 142

 Score = 61.9 bits (31), Expect = 4e-11
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                 
Query: 7  caggtgtcaccaagagttcccttgaccacttcattggga 45
          |||||||| || |||||||||||||||||||||||||||
Sbjct: 3  caggtgtcccctagagttcccttgaccacttcattggga 41


>rco-MIR395d_MI0013416_Ricinus_communis_miR395d_stem-loop_87
          Length = 87

 Score = 48.1 bits (24), Expect = 5e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 agagttcccttgaccacttcattg 42
          ||||||||||||||||||||||||
Sbjct: 3  agagttcccttgaccacttcattg 26


>tcc-MIR395a_MI0017509_Theobroma_cacao_miR395a_stem-loop_123
          Length = 123

 Score = 48.1 bits (24), Expect = 5e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 77  gaagtgtttgggagaactcctgttggca 104
           |||||||||||| |||||||||||||||
Sbjct: 85  gaagtgtttgggggaactcctgttggca 112


>vvi-MIR395h_MI0006563_Vitis_vinifera_miR395h_stem-loop_92
          Length = 92

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 19 agagttcccttgaccacttcattggg 44
          ||||||||||||||||||||| ||||
Sbjct: 8  agagttcccttgaccacttcactggg 33


>vvi-MIR395d_MI0006559_Vitis_vinifera_miR395d_stem-loop_86
          Length = 86

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 19 agagttcccttgaccacttcattggg 44
          ||||||||| ||||||||||||||||
Sbjct: 8  agagttcccctgaccacttcattggg 33


>sly-MIR395b_MI0008370_Solanum_lycopersicum_miR395b_stem-loop_101
          Length = 101

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 agagttcccttgaccacttcat 40
          ||||||||||||||||||||||
Sbjct: 15 agagttcccttgaccacttcat 36


>mdm-MIR395b_MI0023085_137
          Length = 137

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 77  gaagtgtttgggagaactcctgttggcatttgat 110
           |||||||||||| ||||||| |||||||| ||||
Sbjct: 104 gaagtgtttgggggaactccggttggcatctgat 137


>vvi-MIR395k_MI0006566_Vitis_vinifera_miR395k_stem-loop_92
          Length = 92

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 19 agagttcccttgaccacttcattggg 44
          ||||||||||||||||||||| ||||
Sbjct: 7  agagttcccttgaccacttcactggg 32


>vvi-MIR395c_MI0006558_Vitis_vinifera_miR395c_stem-loop_92
          Length = 92

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 19 agagttcccttgaccacttcattggg 44
          ||||||||||||||||||||| ||||
Sbjct: 8  agagttcccttgaccacttcactggg 33


>vvi-MIR395e_MI0006560_Vitis_vinifera_miR395e_stem-loop_92
          Length = 92

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 19 agagttcccttgaccacttcattggg 44
          ||||||||||||||||||||| ||||
Sbjct: 8  agagttcccttgaccacttcactggg 33


>sly-MIR395a_MI0008369_Solanum_lycopersicum_miR395a_stem-loop_199
          Length = 199

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 20  gagttcccttgaccacttcat 40
           |||||||||||||||||||||
Sbjct: 148 gagttcccttgaccacttcat 168


>ptc-MIR395b_MI0002316_Populus_trichocarpa_miR395b_stem-loop_98
          Length = 98

 Score = 40.1 bits (20), Expect = 1e-04
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                              
Query: 10 gtgtcaccaagagttcccttgaccacttcattggga 45
          ||||| || ||||||||||||| ||||||| |||||
Sbjct: 1  gtgtcccctagagttcccttgagcacttcactggga 36


>rco-MIR395a_MI0013413_Ricinus_communis_miR395a_stem-loop_74
          Length = 74

 Score = 38.2 bits (19), Expect = 5e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 19 agagttcccttgaccacttcattggga 45
          ||||||||||||| ||||||| |||||
Sbjct: 3  agagttcccttgaacacttcactggga 29


>rco-MIR395e_MI0013417_Ricinus_communis_miR395e_stem-loop_74
          Length = 74

 Score = 38.2 bits (19), Expect = 5e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 19 agagttcccttgaccacttcattggga 45
          ||||||||||||| ||||||| |||||
Sbjct: 3  agagttcccttgaacacttcactggga 29


>rco-MIR395c_MI0013415_Ricinus_communis_miR395c_stem-loop_82
          Length = 82

 Score = 38.2 bits (19), Expect = 5e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 19 agagttcccttgaccacttcattggga 45
          ||||||||||||| ||||||| |||||
Sbjct: 3  agagttcccttgagcacttcactggga 29


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.