(114 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR391_MI0023123_97                                               192   2e-50
gma-MIR4376_MI0016521_Glycine_max_miR4376_stem-loop_110                46   2e-06

>mdm-MIR391_MI0023123_97
          Length = 97

 Score =  192 bits (97), Expect = 2e-50
 Identities = 97/97 (100%)
 Strand = Plus / Plus

                                                                       
Query: 10  gggaggttcgctacgcaggagagatgacgccgacagtcatgttcttagtattaggattag 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gggaggttcgctacgcaggagagatgacgccgacagtcatgttcttagtattaggattag 60

                                                
Query: 70  aacgacggcgtcatctctcctgcataggaaaccttgc 106
           |||||||||||||||||||||||||||||||||||||
Sbjct: 61  aacgacggcgtcatctctcctgcataggaaaccttgc 97


>gma-MIR4376_MI0016521_Glycine_max_miR4376_stem-loop_110
          Length = 110

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 13 aggttcgctacgcaggagagatgacgc 39
          ||||| |||||||||||||||||||||
Sbjct: 2  aggtttgctacgcaggagagatgacgc 28



 Score = 40.1 bits (20), Expect = 1e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 77  gcgtcatctctcctgcataggaaacctt 104
           |||||||||||||||| ||| |||||||
Sbjct: 28  gcgtcatctctcctgcgtagcaaacctt 1


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.