(109 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR390f_MI0023078_103                                             204   4e-54
mdm-MIR390e_MI0023077_103                                             204   4e-54
mdm-MIR390b_MI0023074_103                                             161   5e-41
ghr-MIR390b_MI0005648_Gossypium_hirsutum_miR390b_stem-loop_132         74   9e-15
ghr-MIR390a_MI0005647_Gossypium_hirsutum_miR390a_stem-loop_124         74   9e-15
csi-MIR390_MI0013317_Citrus_sinensis_miR390_stem-loop_154              70   1e-13
ghr-MIR390c_MI0005649_Gossypium_hirsutum_miR390c_stem-loop_114         66   2e-12
ptc-MIR390a_MI0002305_Populus_trichocarpa_miR390a_stem-loop_119        66   2e-12
vvi-MIR390_MI0006552_Vitis_vinifera_miR390_stem-loop_140               66   2e-12
aly-MIR390a_MI0014569_Arabidopsis_lyrata_miR390a_stem-loop_129         62   3e-11
ptc-MIR390d_MI0002308_Populus_trichocarpa_miR390d_stem-loop_106        62   3e-11
ptc-MIR390b_MI0002306_Populus_trichocarpa_miR390b_stem-loop_106        62   3e-11
ath-MIR390a_MI0001000_Arabidopsis_thaliana_miR390a_stem-loop_107       62   3e-11
bna-MIR390b_MI0006448_Brassica_napus_miR390b_stem-loop_105             62   3e-11
ptc-MIR390c_MI0002307_Populus_trichocarpa_miR390c_stem-loop_123        60   1e-10
tcc-MIR390b_MI0017504_Theobroma_cacao_miR390b_stem-loop_120            58   5e-10
mdm-MIR390a_MI0023073_125                                              58   5e-10
gma-MIR390a_MI0007214_Glycine_max_miR390a_stem-loop_105                58   5e-10
tcc-MIR390a_MI0017503_Theobroma_cacao_miR390a_stem-loop_129            58   5e-10
cme-MIR390_MI0018164_Cucumis_melo_miR390_stem-loop_134                 58   5e-10
mtr-MIR390_MI0005586_Medicago_truncatula_miR390_stem-loop_100          56   2e-09
ppt-MIR390a_MI0003494_Physcomitrella_patens_miR390a_stem-loop_137      54   8e-09
rco-MIR390a_MI0013410_Ricinus_communis_miR390a_stem-loop_108           52   3e-08
mdm-MIR390c_MI0023075_128                                              50   1e-07
mdm-MIR390d_MI0023076_128                                              50   1e-07
gma-MIR390b_MI0007215_Glycine_max_miR390b_stem-loop_103                48   5e-07
bna-MIR390a_MI0006447_Brassica_napus_miR390a_stem-loop_144             48   5e-07
rco-MIR390b_MI0013411_Ricinus_communis_miR390b_stem-loop_122           48   5e-07
bna-MIR390c_MI0006449_Brassica_napus_miR390c_stem-loop_128             48   5e-07
aly-MIR390b_MI0014570_Arabidopsis_lyrata_miR390b_stem-loop_127         46   2e-06
gma-MIR390c_MI0017845_Glycine_max_miR390c_stem-loop_90                 46   2e-06
ath-MIR390b_MI0001001_Arabidopsis_thaliana_miR390b_stem-loop_120       46   2e-06
zma-MIR390b_MI0013244_Zea_mays_miR390b_stem-loop_192                   42   3e-05
osa-MIR390_MI0001690_Oryza_sativa_miR390_stem-loop_91                  42   3e-05
zma-MIR390a_MI0013209_Zea_mays_miR390a_stem-loop_181                   42   3e-05
bdi-MIR390b_MI0018217_Brachypodium_distachyon_miR390b_stem-loop_186    42   3e-05
ppt-MIR390b_MI0003495_Physcomitrella_patens_miR390b_stem-loop_175      42   3e-05
bdi-MIR390_MI0018085_Brachypodium_distachyon_miR390_stem-loop_209      42   3e-05
sbi-MIR390_MI0010887_Sorghum_bicolor_miR390_stem-loop_179              42   3e-05
ppt-MIR390c_MI0004729_Physcomitrella_patens_miR390c_stem-loop_135      40   1e-04
pta-MIR390_MI0005787_Pinus_taeda_miR390_stem-loop_78                   38   5e-04

>mdm-MIR390f_MI0023078_103
          Length = 103

 Score =  204 bits (103), Expect = 4e-54
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   agtgtggaagaatctgttaagctcaggagggatagcgccattctcggtttggtttaacca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agtgtggaagaatctgttaagctcaggagggatagcgccattctcggtttggtttaacca 60

                                                      
Query: 64  cgtatcgcgctatccatcttgggcttcatggcttcttcttact 106
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgtatcgcgctatccatcttgggcttcatggcttcttcttact 103


>mdm-MIR390e_MI0023077_103
          Length = 103

 Score =  204 bits (103), Expect = 4e-54
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   agtgtggaagaatctgttaagctcaggagggatagcgccattctcggtttggtttaacca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agtgtggaagaatctgttaagctcaggagggatagcgccattctcggtttggtttaacca 60

                                                      
Query: 64  cgtatcgcgctatccatcttgggcttcatggcttcttcttact 106
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgtatcgcgctatccatcttgggcttcatggcttcttcttact 103


>mdm-MIR390b_MI0023074_103
          Length = 103

 Score =  161 bits (81), Expect = 5e-41
 Identities = 96/101 (95%)
 Strand = Plus / Plus

                                                                       
Query: 5   gtgtggaagaatctgttaagctcaggagggatagcgccattctcggtttggtttaaccac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgtggaagaatctgttaagctcaggagggatagcgccattctcggtttggtttaaccac 60

                                                    
Query: 65  gtatcgcgctatccatcttgggcttcatggcttcttcttac 105
            ||| |||||||||||| || | ||||||||||||||||||
Sbjct: 61  atatagcgctatccatcctgagtttcatggcttcttcttac 101


>ghr-MIR390b_MI0005648_Gossypium_hirsutum_miR390b_stem-loop_132
          Length = 132

 Score = 73.8 bits (37), Expect = 9e-15
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 8  tggaagaatctgttaagctcaggagggatagcgccat 44
          |||||||||||||||||||||||||||||||||||||
Sbjct: 4  tggaagaatctgttaagctcaggagggatagcgccat 40


>ghr-MIR390a_MI0005647_Gossypium_hirsutum_miR390a_stem-loop_124
          Length = 124

 Score = 73.8 bits (37), Expect = 9e-15
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 8  tggaagaatctgttaagctcaggagggatagcgccat 44
          |||||||||||||||||||||||||||||||||||||
Sbjct: 1  tggaagaatctgttaagctcaggagggatagcgccat 37


>csi-MIR390_MI0013317_Citrus_sinensis_miR390_stem-loop_154
          Length = 154

 Score = 69.9 bits (35), Expect = 1e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 10 gaagaatctgttaagctcaggagggatagcgccat 44
          |||||||||||||||||||||||||||||||||||
Sbjct: 9  gaagaatctgttaagctcaggagggatagcgccat 43



 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 70  gcgctatccatcttgggcttcatggcttcttcttactctc 109
           |||||||||||| || | ||||||||||||||||||||||
Sbjct: 98  gcgctatccatcctgagtttcatggcttcttcttactctc 137


>ghr-MIR390c_MI0005649_Gossypium_hirsutum_miR390c_stem-loop_114
          Length = 114

 Score = 65.9 bits (33), Expect = 2e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 12 agaatctgttaagctcaggagggatagcgccat 44
          |||||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgccat 33


>ptc-MIR390a_MI0002305_Populus_trichocarpa_miR390a_stem-loop_119
          Length = 119

 Score = 65.9 bits (33), Expect = 2e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 12 agaatctgttaagctcaggagggatagcgccat 44
          |||||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgccat 33


>vvi-MIR390_MI0006552_Vitis_vinifera_miR390_stem-loop_140
          Length = 140

 Score = 65.9 bits (33), Expect = 2e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 12 agaatctgttaagctcaggagggatagcgccat 44
          |||||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgccat 33


>aly-MIR390a_MI0014569_Arabidopsis_lyrata_miR390a_stem-loop_129
          Length = 129

 Score = 61.9 bits (31), Expect = 3e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 10 gaagaatctgttaagctcaggagggatagcgccat 44
          ||||||||||| |||||||||||||||||||||||
Sbjct: 17 gaagaatctgtaaagctcaggagggatagcgccat 51


>ptc-MIR390d_MI0002308_Populus_trichocarpa_miR390d_stem-loop_106
          Length = 106

 Score = 61.9 bits (31), Expect = 3e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 12 agaatctgttaagctcaggagggatagcgcc 42
          |||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgcc 31


>ptc-MIR390b_MI0002306_Populus_trichocarpa_miR390b_stem-loop_106
          Length = 106

 Score = 61.9 bits (31), Expect = 3e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 12 agaatctgttaagctcaggagggatagcgcc 42
          |||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgcc 31


>ath-MIR390a_MI0001000_Arabidopsis_thaliana_miR390a_stem-loop_107
          Length = 107

 Score = 61.9 bits (31), Expect = 3e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 10 gaagaatctgttaagctcaggagggatagcgccat 44
          ||||||||||| |||||||||||||||||||||||
Sbjct: 6  gaagaatctgtaaagctcaggagggatagcgccat 40


>bna-MIR390b_MI0006448_Brassica_napus_miR390b_stem-loop_105
          Length = 105

 Score = 61.9 bits (31), Expect = 3e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 10 gaagaatctgttaagctcaggagggatagcgccat 44
          ||||||||||| |||||||||||||||||||||||
Sbjct: 6  gaagaatctgtaaagctcaggagggatagcgccat 40


>ptc-MIR390c_MI0002307_Populus_trichocarpa_miR390c_stem-loop_123
          Length = 123

 Score = 60.0 bits (30), Expect = 1e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 15 atctgttaagctcaggagggatagcgccat 44
          ||||||||||||||||||||||||||||||
Sbjct: 4  atctgttaagctcaggagggatagcgccat 33


>tcc-MIR390b_MI0017504_Theobroma_cacao_miR390b_stem-loop_120
          Length = 120

 Score = 58.0 bits (29), Expect = 5e-10
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 12 agaatctgttaagctcaggagggatagcgccat 44
          ||||||||| |||||||||||||||||||||||
Sbjct: 11 agaatctgtaaagctcaggagggatagcgccat 43


>mdm-MIR390a_MI0023073_125
          Length = 125

 Score = 58.0 bits (29), Expect = 5e-10
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 12 agaatctgttaagctcaggagggatagcgccat 44
          ||||||||| |||||||||||||||||||||||
Sbjct: 9  agaatctgtaaagctcaggagggatagcgccat 41



 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 70  gcgctatccatcttgggcttcatggcttcttcttact 106
           |||||||||||| || | |||||||||||||| ||||
Sbjct: 89  gcgctatccatcctgagtttcatggcttcttcatact 125


>gma-MIR390a_MI0007214_Glycine_max_miR390a_stem-loop_105
          Length = 105

 Score = 58.0 bits (29), Expect = 5e-10
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 12 agaatctgttaagctcaggagggatagcgccat 44
          ||||||||| |||||||||||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagcgccat 33


>tcc-MIR390a_MI0017503_Theobroma_cacao_miR390a_stem-loop_129
          Length = 129

 Score = 58.0 bits (29), Expect = 5e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 17 ctgttaagctcaggagggatagcgccatt 45
          |||||||||||||||||||||||||||||
Sbjct: 16 ctgttaagctcaggagggatagcgccatt 44


>cme-MIR390_MI0018164_Cucumis_melo_miR390_stem-loop_134
          Length = 134

 Score = 58.0 bits (29), Expect = 5e-10
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                   
Query: 3  tagtgtggaagaatctgttaagctcaggagggatagcgcca 43
          |||| |||||||| |||| ||||||||||||||||||||||
Sbjct: 2  tagtatggaagaacctgtaaagctcaggagggatagcgcca 42


>mtr-MIR390_MI0005586_Medicago_truncatula_miR390_stem-loop_100
          Length = 100

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 17 ctgttaagctcaggagggatagcgccat 44
          ||||||||||||||||||||||||||||
Sbjct: 1  ctgttaagctcaggagggatagcgccat 28


>ppt-MIR390a_MI0003494_Physcomitrella_patens_miR390a_stem-loop_137
          Length = 137

 Score = 54.0 bits (27), Expect = 8e-09
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 22 aagctcaggagggatagcgccattctc 48
          |||||||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccattctc 42


>rco-MIR390a_MI0013410_Ricinus_communis_miR390a_stem-loop_108
          Length = 108

 Score = 52.0 bits (26), Expect = 3e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 17 ctgttaagctcaggagggatagcgcc 42
          ||||||||||||||||||||||||||
Sbjct: 1  ctgttaagctcaggagggatagcgcc 26


>mdm-MIR390c_MI0023075_128
          Length = 128

 Score = 50.1 bits (25), Expect = 1e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 15 atctgttaagctcaggagggatagcgcca 43
          |||||| ||||||||||||||||||||||
Sbjct: 12 atctgtaaagctcaggagggatagcgcca 40



 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 72  gctatccatcttgggcttcatggcttcttcttact 106
           |||||||||| || | |||||||||||||||||||
Sbjct: 94  gctatccatcctgagtttcatggcttcttcttact 128


>mdm-MIR390d_MI0023076_128
          Length = 128

 Score = 50.1 bits (25), Expect = 1e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 15 atctgttaagctcaggagggatagcgcca 43
          |||||| ||||||||||||||||||||||
Sbjct: 12 atctgtaaagctcaggagggatagcgcca 40



 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 72  gctatccatcttgggcttcatggcttcttcttact 106
           |||||||||| || | |||||||||||||||||||
Sbjct: 94  gctatccatcctgagtttcatggcttcttcttact 128


>gma-MIR390b_MI0007215_Glycine_max_miR390b_stem-loop_103
          Length = 103

 Score = 48.1 bits (24), Expect = 5e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 12 agaatctgttaagctcaggagggatagc 39
          ||||||||| ||||||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagc 28



 Score = 44.1 bits (22), Expect = 8e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 70  gcgctatccatcttgggcttcatggcttct 99
           |||||||| |||||| ||||||||||||||
Sbjct: 74  gcgctatctatcttgagcttcatggcttct 103


>bna-MIR390a_MI0006447_Brassica_napus_miR390a_stem-loop_144
          Length = 144

 Score = 48.1 bits (24), Expect = 5e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 17 ctgttaagctcaggagggatagcgccat 44
          |||| |||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccat 55


>rco-MIR390b_MI0013411_Ricinus_communis_miR390b_stem-loop_122
          Length = 122

 Score = 48.1 bits (24), Expect = 5e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 taagctcaggagggatagcgccat 44
          ||||||||||||||||||||||||
Sbjct: 5  taagctcaggagggatagcgccat 28


>bna-MIR390c_MI0006449_Brassica_napus_miR390c_stem-loop_128
          Length = 128

 Score = 48.1 bits (24), Expect = 5e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 17 ctgttaagctcaggagggatagcgccat 44
          |||| |||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgccat 45


>aly-MIR390b_MI0014570_Arabidopsis_lyrata_miR390b_stem-loop_127
          Length = 127

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 aagctcaggagggatagcgccat 44
          |||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgccat 41


>gma-MIR390c_MI0017845_Glycine_max_miR390c_stem-loop_90
          Length = 90

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 aagctcaggagggatagcgccat 44
          |||||||||||||||||||||||
Sbjct: 5  aagctcaggagggatagcgccat 27


>ath-MIR390b_MI0001001_Arabidopsis_thaliana_miR390b_stem-loop_120
          Length = 120

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 aagctcaggagggatagcgccat 44
          |||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccat 37


>zma-MIR390b_MI0013244_Zea_mays_miR390b_stem-loop_192
          Length = 192

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 aagctcaggagggatagcgcc 42
          |||||||||||||||||||||
Sbjct: 2  aagctcaggagggatagcgcc 22


>osa-MIR390_MI0001690_Oryza_sativa_miR390_stem-loop_91
          Length = 91

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 aagctcaggagggatagcgcc 42
          |||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39


>zma-MIR390a_MI0013209_Zea_mays_miR390a_stem-loop_181
          Length = 181

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 aagctcaggagggatagcgcc 42
          |||||||||||||||||||||
Sbjct: 2  aagctcaggagggatagcgcc 22


>bdi-MIR390b_MI0018217_Brachypodium_distachyon_miR390b_stem-
          loop_186
          Length = 186

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 aagctcaggagggatagcgcc 42
          |||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39


>ppt-MIR390b_MI0003495_Physcomitrella_patens_miR390b_stem-loop_175
          Length = 175

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 aagctcaggagggatagcgcc 42
          |||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48


>bdi-MIR390_MI0018085_Brachypodium_distachyon_miR390_stem-loop_209
          Length = 209

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 aagctcaggagggatagcgcc 42
          |||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51


>sbi-MIR390_MI0010887_Sorghum_bicolor_miR390_stem-loop_179
          Length = 179

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 aagctcaggagggatagcgcc 42
          |||||||||||||||||||||
Sbjct: 3  aagctcaggagggatagcgcc 23


>ppt-MIR390c_MI0004729_Physcomitrella_patens_miR390c_stem-loop_135
          Length = 135

 Score = 40.1 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 agctcaggagggatagcgcc 42
          ||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33


>pta-MIR390_MI0005787_Pinus_taeda_miR390_stem-loop_78
          Length = 78

 Score = 38.2 bits (19), Expect = 5e-04
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 70 gcgctatccatcttgggcttcat 92
          |||||||||||| ||||||||||
Sbjct: 27 gcgctatccatcctgggcttcat 5


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.