(154 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR390c_MI0023075_128                                             254   7e-69
mdm-MIR390d_MI0023076_128                                             246   2e-66
mdm-MIR390a_MI0023073_125                                              76   3e-15
csi-MIR390_MI0013317_Citrus_sinensis_miR390_stem-loop_154              70   2e-13
tcc-MIR390b_MI0017504_Theobroma_cacao_miR390b_stem-loop_120            68   8e-13
mdm-MIR390b_MI0023074_103                                              68   8e-13
aly-MIR390a_MI0014569_Arabidopsis_lyrata_miR390a_stem-loop_129         58   8e-10
gma-MIR390a_MI0007214_Glycine_max_miR390a_stem-loop_105                58   8e-10
ath-MIR390a_MI0001000_Arabidopsis_thaliana_miR390a_stem-loop_107       58   8e-10
bna-MIR390b_MI0006448_Brassica_napus_miR390b_stem-loop_105             58   8e-10
gma-MIR390c_MI0017845_Glycine_max_miR390c_stem-loop_90                 56   3e-09
ptc-MIR390c_MI0002307_Populus_trichocarpa_miR390c_stem-loop_123        56   3e-09
bna-MIR390c_MI0006449_Brassica_napus_miR390c_stem-loop_128             56   3e-09
bna-MIR390a_MI0006447_Brassica_napus_miR390a_stem-loop_144             54   1e-08
cme-MIR390_MI0018164_Cucumis_melo_miR390_stem-loop_134                 54   1e-08
ghr-MIR390b_MI0005648_Gossypium_hirsutum_miR390b_stem-loop_132         50   2e-07
ghr-MIR390c_MI0005649_Gossypium_hirsutum_miR390c_stem-loop_114         50   2e-07
gma-MIR390b_MI0007215_Glycine_max_miR390b_stem-loop_103                50   2e-07
ptc-MIR390a_MI0002305_Populus_trichocarpa_miR390a_stem-loop_119        50   2e-07
ghr-MIR390a_MI0005647_Gossypium_hirsutum_miR390a_stem-loop_124         50   2e-07
vvi-MIR390_MI0006552_Vitis_vinifera_miR390_stem-loop_140               50   2e-07
mdm-MIR390f_MI0023078_103                                              50   2e-07
mdm-MIR390e_MI0023077_103                                              50   2e-07
aly-MIR390b_MI0014570_Arabidopsis_lyrata_miR390b_stem-loop_127         48   8e-07
ptc-MIR390d_MI0002308_Populus_trichocarpa_miR390d_stem-loop_106        48   8e-07
ath-MIR390b_MI0001001_Arabidopsis_thaliana_miR390b_stem-loop_120       48   8e-07
ptc-MIR390b_MI0002306_Populus_trichocarpa_miR390b_stem-loop_106        48   8e-07
tcc-MIR390a_MI0017503_Theobroma_cacao_miR390a_stem-loop_129            48   8e-07
mtr-MIR390_MI0005586_Medicago_truncatula_miR390_stem-loop_100          46   3e-06
rco-MIR390a_MI0013410_Ricinus_communis_miR390a_stem-loop_108           44   1e-05
ppt-MIR390a_MI0003494_Physcomitrella_patens_miR390a_stem-loop_137      44   1e-05
rco-MIR390b_MI0013411_Ricinus_communis_miR390b_stem-loop_122           44   1e-05
zma-MIR390b_MI0013244_Zea_mays_miR390b_stem-loop_192                   42   5e-05
osa-MIR390_MI0001690_Oryza_sativa_miR390_stem-loop_91                  42   5e-05
zma-MIR390a_MI0013209_Zea_mays_miR390a_stem-loop_181                   42   5e-05
bdi-MIR390b_MI0018217_Brachypodium_distachyon_miR390b_stem-loop_186    42   5e-05
ppt-MIR390b_MI0003495_Physcomitrella_patens_miR390b_stem-loop_175      42   5e-05
bdi-MIR390_MI0018085_Brachypodium_distachyon_miR390_stem-loop_209      42   5e-05
sbi-MIR390_MI0010887_Sorghum_bicolor_miR390_stem-loop_179              42   5e-05
ppt-MIR390c_MI0004729_Physcomitrella_patens_miR390c_stem-loop_135      40   2e-04

>mdm-MIR390c_MI0023075_128
          Length = 128

 Score =  254 bits (128), Expect = 7e-69
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                       
Query: 14  agtaagggaggatctgtaaagctcaggagggatagcgccagatgaattaaccaagattct 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agtaagggaggatctgtaaagctcaggagggatagcgccagatgaattaaccaagattct 60

                                                                       
Query: 74  aacaattaagcgtttatttggtcatcatctgatgctatccatcctgagtttcatggcttc 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aacaattaagcgtttatttggtcatcatctgatgctatccatcctgagtttcatggcttc 120

                   
Query: 134 ttcttact 141
           ||||||||
Sbjct: 121 ttcttact 128


>mdm-MIR390d_MI0023076_128
          Length = 128

 Score =  246 bits (124), Expect = 2e-66
 Identities = 127/128 (99%)
 Strand = Plus / Plus

                                                                       
Query: 14  agtaagggaggatctgtaaagctcaggagggatagcgccagatgaattaaccaagattct 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agtaagggaggatctgtaaagctcaggagggatagcgccagatgaattaaccaagattct 60

                                                                       
Query: 74  aacaattaagcgtttatttggtcatcatctgatgctatccatcctgagtttcatggcttc 133
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61  aacaattaagcgtttatttggtcatcatctgargctatccatcctgagtttcatggcttc 120

                   
Query: 134 ttcttact 141
           ||||||||
Sbjct: 121 ttcttact 128


>mdm-MIR390a_MI0023073_125
          Length = 125

 Score = 75.8 bits (38), Expect = 3e-15
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                        
Query: 14 agtaagggaggatctgtaaagctcaggagggatagcgccagatgaa 59
          |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 1  agtaagggagaatctgtaaagctcaggagggatagcgccatatgaa 46



 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 107 gctatccatcctgagtttcatggcttcttcttact 141
           |||||||||||||||||||||||||||||| ||||
Sbjct: 91  gctatccatcctgagtttcatggcttcttcatact 125


>csi-MIR390_MI0013317_Citrus_sinensis_miR390_stem-loop_154
          Length = 154

 Score = 69.9 bits (35), Expect = 2e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 107 gctatccatcctgagtttcatggcttcttcttact 141
           |||||||||||||||||||||||||||||||||||
Sbjct: 100 gctatccatcctgagtttcatggcttcttcttact 134



 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                    
Query: 12 aaagtaagggaggatctgtaaagctcaggagggatagcgcca 53
          ||||||| | || |||||| ||||||||||||||||||||||
Sbjct: 1  aaagtaaagaagaatctgttaagctcaggagggatagcgcca 42


>tcc-MIR390b_MI0017504_Theobroma_cacao_miR390b_stem-loop_120
          Length = 120

 Score = 67.9 bits (34), Expect = 8e-13
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                    
Query: 12 aaagtaagggaggatctgtaaagctcaggagggatagcgcca 53
          |||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 1  aaagtatgggagaatctgtaaagctcaggagggatagcgcca 42



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 107 gctatccatcctgagtttcatggcttcttc 136
           |||||| |||||||||||||||| ||||||
Sbjct: 81  gctatctatcctgagtttcatgggttcttc 110


>mdm-MIR390b_MI0023074_103
          Length = 103

 Score = 67.9 bits (34), Expect = 8e-13
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 107 gctatccatcctgagtttcatggcttcttcttac 140
           ||||||||||||||||||||||||||||||||||
Sbjct: 68  gctatccatcctgagtttcatggcttcttcttac 101



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 25 atctgtaaagctcaggagggatagcgcca 53
          |||||| ||||||||||||||||||||||
Sbjct: 11 atctgttaagctcaggagggatagcgcca 39


>aly-MIR390a_MI0014569_Arabidopsis_lyrata_miR390a_stem-loop_129
          Length = 129

 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 25 atctgtaaagctcaggagggatagcgcca 53
          |||||||||||||||||||||||||||||
Sbjct: 22 atctgtaaagctcaggagggatagcgcca 50



 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 107 gctatccatcctgagtttcatggcttcttcttacta 142
           ||||||||||||||||||||| |  |||||||||||
Sbjct: 82  gctatccatcctgagtttcattggctcttcttacta 117


>gma-MIR390a_MI0007214_Glycine_max_miR390a_stem-loop_105
          Length = 105

 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 25 atctgtaaagctcaggagggatagcgcca 53
          |||||||||||||||||||||||||||||
Sbjct: 4  atctgtaaagctcaggagggatagcgcca 32



 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 107 gctatccatcctgagtttcatggcttct 134
           ||||||||||||||||||||||||||||
Sbjct: 69  gctatccatcctgagtttcatggcttct 96


>ath-MIR390a_MI0001000_Arabidopsis_thaliana_miR390a_stem-loop_107
          Length = 107

 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 25 atctgtaaagctcaggagggatagcgcca 53
          |||||||||||||||||||||||||||||
Sbjct: 11 atctgtaaagctcaggagggatagcgcca 39



 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 107 gctatccatcctgagtttcatggcttcttcttacta 142
           ||||||||||||||||||||| |  |||||||||||
Sbjct: 71  gctatccatcctgagtttcattggctcttcttacta 106


>bna-MIR390b_MI0006448_Brassica_napus_miR390b_stem-loop_105
          Length = 105

 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 25 atctgtaaagctcaggagggatagcgcca 53
          |||||||||||||||||||||||||||||
Sbjct: 11 atctgtaaagctcaggagggatagcgcca 39



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 111 tccatcctgagtttcatggcttcttcttacta 142
           ||||||||||||||||| |  |||||||||||
Sbjct: 73  tccatcctgagtttcattggctcttcttacta 104


>gma-MIR390c_MI0017845_Glycine_max_miR390c_stem-loop_90
          Length = 90

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 107 gctatccatcctgagtttcatggcttct 134
           ||||||||||||||||||||||||||||
Sbjct: 63  gctatccatcctgagtttcatggcttct 90



 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 28 tgtaaagctcaggagggatagcgcca 53
          ||||||||||||||||||||||||||
Sbjct: 1  tgtaaagctcaggagggatagcgcca 26


>ptc-MIR390c_MI0002307_Populus_trichocarpa_miR390c_stem-loop_123
          Length = 123

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 22 aggatctgtaaagctcaggagggatagcgcca 53
          ||||||||| ||||||||||||||||||||||
Sbjct: 1  aggatctgttaagctcaggagggatagcgcca 32


>bna-MIR390c_MI0006449_Brassica_napus_miR390c_stem-loop_128
          Length = 128

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 107 gctatccatcctgagtttcatggcttcttctt 138
           ||||||||||||||||| ||||||||||||||
Sbjct: 87  gctatccatcctgagttccatggcttcttctt 118



 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 27 ctgtaaagctcaggagggatagcgcca 53
          |||||||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgcca 44


>bna-MIR390a_MI0006447_Brassica_napus_miR390a_stem-loop_144
          Length = 144

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 27 ctgtaaagctcaggagggatagcgcca 53
          |||||||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgcca 54



 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 107 gctatccatcctgagtttcatggcttcttctt 138
           |||||||||||||||||  |||||||||||||
Sbjct: 97  gctatccatcctgagttctatggcttcttctt 128


>cme-MIR390_MI0018164_Cucumis_melo_miR390_stem-loop_134
          Length = 134

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 27 ctgtaaagctcaggagggatagcgcca 53
          |||||||||||||||||||||||||||
Sbjct: 16 ctgtaaagctcaggagggatagcgcca 42



 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 107 gctatccatcctgagtttcatggcttcttctt 138
           |||||| |||||||||||||| ||||||||||
Sbjct: 97  gctatctatcctgagtttcatagcttcttctt 128


>ghr-MIR390b_MI0005648_Gossypium_hirsutum_miR390b_stem-loop_132
          Length = 132

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 25 atctgtaaagctcaggagggatagcgcca 53
          |||||| ||||||||||||||||||||||
Sbjct: 11 atctgttaagctcaggagggatagcgcca 39



 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 107 gctatccatcctgagtttcatggcttcttctt 138
           ||||||||||||||||||||| | ||||||||
Sbjct: 96  gctatccatcctgagtttcatcggttcttctt 127


>ghr-MIR390c_MI0005649_Gossypium_hirsutum_miR390c_stem-loop_114
          Length = 114

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 25 atctgtaaagctcaggagggatagcgcca 53
          |||||| ||||||||||||||||||||||
Sbjct: 4  atctgttaagctcaggagggatagcgcca 32



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 107 gctatccatcctgagtttcat 127
           |||||||||||||||||||||
Sbjct: 89  gctatccatcctgagtttcat 109


>gma-MIR390b_MI0007215_Glycine_max_miR390b_stem-loop_103
          Length = 103

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 25 atctgtaaagctcaggagggatagc 49
          |||||||||||||||||||||||||
Sbjct: 4  atctgtaaagctcaggagggatagc 28


>ptc-MIR390a_MI0002305_Populus_trichocarpa_miR390a_stem-loop_119
          Length = 119

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 25 atctgtaaagctcaggagggatagcgcca 53
          |||||| ||||||||||||||||||||||
Sbjct: 4  atctgttaagctcaggagggatagcgcca 32


>ghr-MIR390a_MI0005647_Gossypium_hirsutum_miR390a_stem-loop_124
          Length = 124

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 25 atctgtaaagctcaggagggatagcgcca 53
          |||||| ||||||||||||||||||||||
Sbjct: 8  atctgttaagctcaggagggatagcgcca 36



 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 107 gctatccatcctgagtttcatggcttcttctt 138
           ||||||||||||||||||||| | ||||||||
Sbjct: 93  gctatccatcctgagtttcatcggttcttctt 124


>vvi-MIR390_MI0006552_Vitis_vinifera_miR390_stem-loop_140
          Length = 140

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 25 atctgtaaagctcaggagggatagcgcca 53
          |||||| ||||||||||||||||||||||
Sbjct: 4  atctgttaagctcaggagggatagcgcca 32


>mdm-MIR390f_MI0023078_103
          Length = 103

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 25 atctgtaaagctcaggagggatagcgcca 53
          |||||| ||||||||||||||||||||||
Sbjct: 12 atctgttaagctcaggagggatagcgcca 40



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 107 gctatccatcctgagtttcatggcttcttcttact 141
           |||||||||| || | |||||||||||||||||||
Sbjct: 69  gctatccatcttgggcttcatggcttcttcttact 103


>mdm-MIR390e_MI0023077_103
          Length = 103

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 25 atctgtaaagctcaggagggatagcgcca 53
          |||||| ||||||||||||||||||||||
Sbjct: 12 atctgttaagctcaggagggatagcgcca 40



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 107 gctatccatcctgagtttcatggcttcttcttact 141
           |||||||||| || | |||||||||||||||||||
Sbjct: 69  gctatccatcttgggcttcatggcttcttcttact 103


>aly-MIR390b_MI0014570_Arabidopsis_lyrata_miR390b_stem-loop_127
          Length = 127

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 30 taaagctcaggagggatagcgcca 53
          ||||||||||||||||||||||||
Sbjct: 17 taaagctcaggagggatagcgcca 40



 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 107 gctatccatcctgagtttcatggcttcttctt 138
           ||||||||||||||||| ||| ||||||||||
Sbjct: 93  gctatccatcctgagttccatagcttcttctt 124


>ptc-MIR390d_MI0002308_Populus_trichocarpa_miR390d_stem-loop_106
          Length = 106

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 25 atctgtaaagctcaggagggatagcgcc 52
          |||||| |||||||||||||||||||||
Sbjct: 4  atctgttaagctcaggagggatagcgcc 31


>ath-MIR390b_MI0001001_Arabidopsis_thaliana_miR390b_stem-loop_120
          Length = 120

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 30 taaagctcaggagggatagcgcca 53
          ||||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgcca 36



 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 107 gctatccatcctgagtttcatggcttcttctt 138
           ||||||||||||||||| ||| ||||||||||
Sbjct: 89  gctatccatcctgagttccatagcttcttctt 120


>ptc-MIR390b_MI0002306_Populus_trichocarpa_miR390b_stem-loop_106
          Length = 106

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 25 atctgtaaagctcaggagggatagcgcc 52
          |||||| |||||||||||||||||||||
Sbjct: 4  atctgttaagctcaggagggatagcgcc 31



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 107 gctatccatcctgagtttcatggctt 132
           ||||||||||||||||||||| ||||
Sbjct: 81  gctatccatcctgagtttcattgctt 106


>tcc-MIR390a_MI0017503_Theobroma_cacao_miR390a_stem-loop_129
          Length = 129

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 107 gctatccatcctgagtttcatggcttcttctt 138
           ||||||||||||||||||||| | ||||||||
Sbjct: 90  gctatccatcctgagtttcatcggttcttctt 121



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 27 ctgtaaagctcaggagggatagcgcca 53
          |||| ||||||||||||||||||||||
Sbjct: 16 ctgttaagctcaggagggatagcgcca 42


>mtr-MIR390_MI0005586_Medicago_truncatula_miR390_stem-loop_100
          Length = 100

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 27 ctgtaaagctcaggagggatagcgcca 53
          |||| ||||||||||||||||||||||
Sbjct: 1  ctgttaagctcaggagggatagcgcca 27



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 107 gctatccatcctgagtttcatgg 129
           |||||||||||||||||||||||
Sbjct: 78  gctatccatcctgagtttcatgg 100


>rco-MIR390a_MI0013410_Ricinus_communis_miR390a_stem-loop_108
          Length = 108

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 27 ctgtaaagctcaggagggatagcgcc 52
          |||| |||||||||||||||||||||
Sbjct: 1  ctgttaagctcaggagggatagcgcc 26



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 107 gctatccatcctgagtttca 126
           ||||||||||||||||||||
Sbjct: 84  gctatccatcctgagtttca 103


>ppt-MIR390a_MI0003494_Physcomitrella_patens_miR390a_stem-loop_137
          Length = 137

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 32 aagctcaggagggatagcgcca 53
          ||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgcca 37


>rco-MIR390b_MI0013411_Ricinus_communis_miR390b_stem-loop_122
          Length = 122

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 32 aagctcaggagggatagcgcca 53
          ||||||||||||||||||||||
Sbjct: 6  aagctcaggagggatagcgcca 27



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 107 gctatccatcctgagtttcat 127
           |||||||||||||||||||||
Sbjct: 98  gctatccatcctgagtttcat 118


>zma-MIR390b_MI0013244_Zea_mays_miR390b_stem-loop_192
          Length = 192

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 32 aagctcaggagggatagcgcc 52
          |||||||||||||||||||||
Sbjct: 2  aagctcaggagggatagcgcc 22


>osa-MIR390_MI0001690_Oryza_sativa_miR390_stem-loop_91
          Length = 91

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 32 aagctcaggagggatagcgcc 52
          |||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39


>zma-MIR390a_MI0013209_Zea_mays_miR390a_stem-loop_181
          Length = 181

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 32 aagctcaggagggatagcgcc 52
          |||||||||||||||||||||
Sbjct: 2  aagctcaggagggatagcgcc 22


>bdi-MIR390b_MI0018217_Brachypodium_distachyon_miR390b_stem-
          loop_186
          Length = 186

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 32 aagctcaggagggatagcgcc 52
          |||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39


>ppt-MIR390b_MI0003495_Physcomitrella_patens_miR390b_stem-loop_175
          Length = 175

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 32 aagctcaggagggatagcgcc 52
          |||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48


>bdi-MIR390_MI0018085_Brachypodium_distachyon_miR390_stem-loop_209
          Length = 209

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 32 aagctcaggagggatagcgcc 52
          |||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51


>sbi-MIR390_MI0010887_Sorghum_bicolor_miR390_stem-loop_179
          Length = 179

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 32 aagctcaggagggatagcgcc 52
          |||||||||||||||||||||
Sbjct: 3  aagctcaggagggatagcgcc 23


>ppt-MIR390c_MI0004729_Physcomitrella_patens_miR390c_stem-loop_135
          Length = 135

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 agctcaggagggatagcgcc 52
          ||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.