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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttcttccatgctcatctatccatttcagtacacttcccttgttgcgtgactcgctatttcgcatcagtcaatcagccctctagtacaacgattgacgatgaacgttttcactgcagGGAACTTTTTCGCTGTACACTCAAGCGGCGTGGAACAAGATAAATGGGCTGAAACCCACACTGGGTGCAAATGAGCCATCGAAGCAGGCTGGGTCTGCGG

Basic information

species Physcomitrella patens
transcript PP1S9_85V6.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcagtcaatcagccctctagtacaacgattgacgatgaacgttttcactgcagGGAACTTTTTCGCTGTACACTCAAGCGGCGTGGAACAAGATAAATGGGCTGAAACCCACACTGGGTGCAAATGAGCCATCGAAGCAGGCTGGGTCTGCGG
                            gattgac  putative branch site (score: 3)
                                           ttttcact  putative PPT