Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acagttatatatatttatatatatatatatatatatatatgaaaacatatgcaaactacaaccacggtagttttttaacccaatattttgacttgtgtagGGATGGATCTGATGTGCGTGGTTATTTTGCGTGGTCATTAATGGACAACTTTGAATGGGCAGTGGGCTACACCGTCCGCTTTGGAATCTATTATGTGGAT

Basic information

species Physcomitrella patens
transcript PP1S9_78V6.3
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208388838|gb|DC945414.1|DC945414
EST:     CGAATAAATTATTACCACAGTTACATGCAAAACCTCCTCCTTGCAATCAG                         GGATGGATCTGATGTGCGTGGTTATTTTGCGTGGTCATTAATGGACAACTT
genomic: CGAATAAATTATTACCACAGTTACATGCAAAACCTCCTCCTTGCAATCAGgtaattatat ... acttgtgtagGGATGGATCTGATGTGCGTGGTTATTTTGCGTGGTCATTAATGGACAACTT
EST: gi|18332916|gb|BJ164929.1|BJ164929
EST:     CGAATAAATTATTACCACAGTTACATGCAAAACCTCCTCCTTGCAATCAG                         GGATGGATCTGATGTGCGTGGTTATTTTGCGTGGTCATTAATGGACAACTT
genomic: CGAATAAATTATTACCACAGTTACATGCAAAACCTCCTCCTTGCAATCAGgtaattatat ... acttgtgtagGGATGGATCTGATGTGCGTGGTTATTTTGCGTGGTCATTAATGGACAACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatgcaaactacaaccacggtagttttttaacccaatattttgacttgtgtagGGATGGATCTGATGTGCGTGGTTATTTTGCGTGGTCATTAATGGACAACTTTGAATGGGCAGTGGGCTACACCGTCCGCTTTGGAATCTATTATGTGGAT
                      tagttttttaa  TA-rich tract