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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatatatatatatatattcaatcacactaccatactcgttgttttttattttattttaatttaatgagaaatcttatcaagttatatggtctatacagACAGTATCTGAGTGGCTATTCATAGCGCCAACTGGGATGCGGAAGTTGCTGGGGTGGGTACGGAATAGATACAACAATCCAATAGTATACATCACTGAAA

Basic information

species Physcomitrella patens
transcript PP1S9_78V6.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37829187|gb|BJ587199.1|BJ587199
EST:     GATACAGAAATGGCGTTCCCATTGGAGATCCG                         ACAGTATCTGAGTGGCTATTCATAGCGCCAACTGGGATGCGGAAGTTGCTG
genomic: GATACAGAAATGGCGTTCCCATTGGAGATCCGgtaaggcaat ... gtctatacagACAGTATCTGAGTGGCTATTCATAGCGCCAACTGGGATGCGGAAGTTGCTG
EST: gi|208395632|gb|DC924182.1|DC924182
EST:     GATACAGAAATGGCGTTCCCATTGGAGATCCG                         ACAGTATCTGAGTGGCTATTCATAGCGCCAACTGGGATGCGGAAGTTGCTG
genomic: GATACAGAAATGGCGTTCCCATTGGAGATCCGgtaaggcaat ... gtctatacagACAGTATCTGAGTGGCTATTCATAGCGCCAACTGGGATGCGGAAGTTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttattttattttaatttaatgagaaatcttatcaagttatatggtctatacagACAGTATCTGAGTGGCTATTCATAGCGCCAACTGGGATGCGGAAGTTGCTGGGGTGGGTACGGAATAGATACAACAATCCAATAGTATACATCACTGAAA
     ttttattttaatttaa  TA-rich tract