Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaaatccacactctttctaattcaatttacattcctgctaagtttctgcaacatgacatcatttccacaatactgtgtaacaaaggtgatgcttatcgtttataaactacttgccacactaaccctttgcccgtacatcttcccgaacaaatcaatctgcagAGGGCACAGGCGTGGTGAATTGGGAAGGAGTCAAATACTATGATAATCTAATCAGCGAACTTTTGAAACTTGGCATTGAACCCTATGTCACATTATACCA

Basic information

species Physcomitrella patens
transcript PP1S9_78V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100422284|gb|BY976298.1|BY976298
EST:     AAATATGGAGGCATATCGATTTTCCATCTCCTGGCCACGCGTGTTTCCAA                         AGGGCACAGGCGTGGTGAATTGGGAAGGAGTCAAATACTATGATAATCTAA
genomic: AAATATGGAGGCATATCGATTTTCCATCTCCTGGCCACGCGTGTTTCCAAgtatttaaat ... caatctgcagAGGGCACAGGCGTGGTGAATTGGGAAGGAGTCAAATACTATGATAATCTAA
EST: gi|100368597|gb|BY967085.1|BY967085
EST:     AAATATGGAGGCATATCGATTTTCCATCTCCTGGCCACGCGTGTTTCCAA                         AGGGCACAGGCGTGGTGAATTGGGAAGGAGTCAAATACTATGATAATCTAA
genomic: AAATATGGAGGCATATCGATTTTCCATCTCCTGGCCACGCGTGTTTCCAAgtatttaaat ... caatctgcagAGGGCACAGGCGTGGTGAATTGGGAAGGAGTCAAATACTATGATAATCTAA
EST: gi|208351779|gb|DC910347.1|DC910347
EST:     AAATATGGAGGCATATCGATTTTCCATCTCCTGGCCACGCGTGTTTCCAA                         AGGGCACAGGCGTGGTGAATTGGGAAGGAGTCAAATACTATGATAATCTAA
genomic: AAATATGGAGGCATATCGATTTTCCATCTCCTGGCCACGCGTGTTTCCAAgtatttaaat ... caatctgcagAGGGCACAGGCGTGGTGAATTGGGAAGGAGTCAAATACTATGATAATCTAA
EST: gi|18324869|gb|BJ156864.1|BJ156864
EST:     AAATATGGAGGCATATCGATTTTCCATCTCCTGGCCACGCGTGTTTCCAA                         AGGGCACAGGCGTGGTGAATTGGGAAGGAGTCAAATACTATGATAATCTAA
genomic: AAATATGGAGGCATATCGATTTTCCATCTCCTGGCCACGCGTGTTTCCAAgtatttaaat ... caatctgcagAGGGCACAGGCGTGGTGAATTGGGAAGGAGTCAAATACTATGATAATCTAA
EST: gi|100429759|gb|BY959724.1|BY959724
EST:     AAATATGGAGGCATATCGATTTTCCATCTCCTGGCCACGCGTGTTTCCAA                         AGGGCACAGGCGTGGTGAATTGGGAAGGAGTCAAATACTATGATAATCTAA
genomic: AAATATGGAGGCATATCGATTTTCCATCTCCTGGCCACGCGTGTTTCCAAgtatttaaat ... caatctgcagAGGGCACAGGCGTGGTGAATTGGGAAGGAGTCAAATACTATGATAATCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttgccacactaaccctttgcccgtacatcttcccgaacaaatcaatctgcagAGGGCACAGGCGTGGTGAATTGGGAAGGAGTCAAATACTATGATAATCTAATCAGCGAACTTTTGAAACTTGGCATTGAACCCTATGTCACATTATACCA
         cactaac  putative branch site (score: 1)
                                         aaatcaat  TA-rich tract