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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttttggccttgatgtctgatccttttcttgaaatggtgagcctttcagctcatcacaagcgaaataccatcttagacgttgaaataattttatattcatccacaatctagtttcattctcgtcagctgacttcttcacttaagttgcagttttgtttagaagcgcagctgaagcttaactgaacagGTATTGAAGCATCCCGCGGAGGTCTAGTTCTCTGGCCGATTTTGAAGGAGCGGTCTTGAAATTCCTTTAGAATGTTTCGAAAGACTTGTAGAAAACCGAA

Basic information

species Physcomitrella patens
transcript PP1S9_63V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37827161|gb|BJ585173.1|BJ585173
EST:     AGTCTGCCTGCAGCGTACATATCGGAACTTTTTTCGGCAGCTATCTGAAG                         GTATTGAAGCATCCCGCGGAGGTCTAGTTCTCTGGCCGATTTTGAAGGAGC
genomic: AGTCTGCCTGCAGCGTACATATCGGAACTTTTTTCGGCAGCTATCTGAAGgtgatttttg ... aactgaacagGTATTGAAGCATCCCGCGGAGGTCTAGTTCTCTGGCCGATTTTGAAGGAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcacttaagttgcagttttgtttagaagcgcagctgaagcttaactgaacagGTATTGAAGCATCCCGCGGAGGTCTAGTTCTCTGGCCGATTTTGAAGGAGCGGTCTTGAAATTCCTTTAGAATGTTTCGAAAGACTTGTAGAAAACCGAA
                                         gcttaac  putative branch site (score: 3)
                  ttttgttta  TA-rich tract