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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggagtatttccagcatgctcatttctcttattccactgaccagatttccagcattagaaaacaaggtctccttgcaaggctgtctaaagttgccagacatgcaatacaaagaattgctgaccacggattgtgtgtcattgcagCACTCTTAGCAGGCACATGGATGCGAGCTTCAAAGCTAGCCAGCTACGGCATGATCTTCTCCGCTCTTCTGACCCAACTTGCCTACGTCAAAGTTCTCGT

Basic information

species Physcomitrella patens
transcript PP1S9_480V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162176764|gb|FC353311.1|FC353311
EST:     CGGAGGCTTGTCGCTGGTCATTGTTTCCTTCATTTGGAGCTCCAGCTCAG                         CACTCTTAGCAGGCACATGGATGCGAGCTTCAAAGCTAGCCAGCTACGGCA
genomic: CGTAGGCTTGTCGCTGGTCATTGTTTCCTTCATTTGGAGCTCCAGCTCAGgtgggagtat ... gtcattgcagCACTCTTAGCAGGCACATGGATGCGAGCTTCAAAGCTAGCCAGCTACGGCA
EST: gi|37832661|gb|BJ590673.1|BJ590673
EST:     CGTAGGCTTGTCGCTGGTCATTGTTTCCTTCATTTGGAGCTCCAGCTCAG                         CACTCTTAGCAGGCACATGGATGCGAGCTTCAAAGCTAGCCAGCTACGGCA
genomic: CGTAGGCTTGTCGCTGGTCATTGTTTCCTTCATTTGGAGCTCCAGCTCAGgtgggagtat ... gtcattgcagCACTCTTAGCAGGCACATGGATGCGAGCTTCAAAGCTAGCCAGCTACGGCA
EST: gi|162184005|gb|FC359375.1|FC359375
EST:     CGGAGGCTTGTCGCTGGTCATTGTTTCCTTCATTTGGAGCTCCAGCTCAG                         CACTCTTAGCAGGCACATGGATGCGAGCTTCAAAGCTAGCCAGCTACGGCA
genomic: CGTAGGCTTGTCGCTGGTCATTGTTTCCTTCATTTGGAGCTCCAGCTCAGgtgggagtat ... gtcattgcagCACTCTTAGCAGGCACATGGATGCGAGCTTCAAAGCTAGCCAGCTACGGCA
EST: gi|37829701|gb|BJ587713.1|BJ587713
EST:     CGTAGGCTTGTCGCTGGTCATTGTTTCCTTCATTTGGAGCTCCAGCTCAG                         CACTCTTAGCAGGCACATGGATGCGAGCTTCAAAGCTAGCCAGCTACGGCA
genomic: CGTAGGCTTGTCGCTGGTCATTGTTTCCTTCATTTGGAGCTCCAGCTCAGgtgggagtat ... gtcattgcagCACTCTTAGCAGGCACATGGATGCGAGCTTCAAAGCTAGCCAGCTACGGCA
EST: gi|162184006|gb|FC359376.1|FC359376
EST:     CGGAGGCTTGTCGCTGGTCATTGTTTCCTTCATTTGGAGCTCCAGCTCAG                         CACTCTTAGCAGGCACATGGATGCGAGCTTCAAAGCTAGCCAGCTACGGCA
genomic: CGTAGGCTTGTCGCTGGTCATTGTTTCCTTCATTTGGAGCTCCAGCTCAGgtgggagtat ... gtcattgcagCACTCTTAGCAGGCACATGGATGCGAGCTTCAAAGCTAGCCAGCTACGGCA
EST: gi|162175772|gb|FC352074.1|FC352074
EST:     CGGAGGCTTGTCGCTGGTCATTGTTTCCTTCATTTGGAGCTCCAGCTCAG                         CACTCTTAGCAGGCACATGGATGCGAGCTTCAAAGCTAGCCAGCTACGGCA
genomic: CGTAGGCTTGTCGCTGGTCATTGTTTCCTTCATTTGGAGCTCCAGCTCAGgtgggagtat ... gtcattgcagCACTCTTAGCAGGCACATGGATGCGAGCTTCAAAGCTAGCCAGCTACGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgccagacatgcaatacaaagaattgctgaccacggattgtgtgtcattgcagCACTCTTAGCAGGCACATGGATGCGAGCTTCAAAGCTAGCCAGCTACGGCATGATCTTCTCCGCTCTTCTGACCCAACTTGCCTACGTCAAAGTTCTCGT
                          tgctgac  putative branch site (score: 2)
              aatacaaa  TA-rich tract