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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattcttcacacttgtgtgtgtgtgtatgtgtaagtaagttttccactttctaaagttcaatgagactatgcatattggagtctttaccatatttttgtgaaccaaacgtcgactgtgcagGCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGGAATGAAGGGCTTTTCTTCAAGAATCTTTACCCTTCACCAAAACCCCACC

Basic information

species Physcomitrella patens
transcript PP1S9_480V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162176764|gb|FC353311.1|FC353311
EST:     ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAG                         GCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
genomic: ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAGgtatattctt ... gactgtgcagGCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
EST: gi|162184005|gb|FC359375.1|FC359375
EST:     ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAG                         GCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
genomic: ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAGgtatattctt ... gactgtgcagGCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
EST: gi|37829701|gb|BJ587713.1|BJ587713
EST:     ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAG                         GCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
genomic: ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAGgtatattctt ... gactgtgcagGCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
EST: gi|162175773|gb|FC352075.1|FC352075
EST:     ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAG                         GCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
genomic: ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAGgtatattctt ... gactgtgcagGCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
EST: gi|162184006|gb|FC359376.1|FC359376
EST:     ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAG                         GCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
genomic: ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAGgtatattctt ... gactgtgcagGCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
EST: gi|162175772|gb|FC352074.1|FC352074
EST:     ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAG                         GCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
genomic: ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAGgtatattctt ... gactgtgcagGCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgcatattggagtctttaccatatttttgtgaaccaaacgtcgactgtgcagGCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGGAATGAAGGGCTTTTCTTCAAGAATCTTTACCCTTCACCAAAACCCCACC
                 tttaccatattttt  TA-rich tract