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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATCGCAGCATATGCGCAACATTGCGCAAGACACTTTCCATCAGTACGATCGCATCGCTTATAGAACCATGAAAGGGTTAGATGATTCCGGAAGCAGAgtgagtaacaaacatccgttcgcaacaattctgtctgattagcttggcatagtggcaatgcgtaactgtaacatagaatgtgcgtggctgcagtgcgtgg...

Basic information

species Physcomitrella patens
transcript PP1S9_480V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162176764|gb|FC353311.1|FC353311
EST:     ATCGCATCGCTTATAGAACCATGAAAGGGTTAGATGATTCCGGAAGCAGA                         GTGCTGAGGCAACTTGACGCAGATGCTCAAGCGCTTGAACGGGAACTCAGG
genomic: ATCGCATCGCTTATAGAACCATGAAAGGGTTAGATGATTCCGGAAGCAGAgtgagtaaca ... cgcactgcagGTGCTGAGGCAACTTGACGCAGATGCTCAAGCGCTTGAACGGGAACTCAGG
EST: gi|162175773|gb|FC352075.1|FC352075
EST:     ATCGCATCGCTTATAGAACCATGAAAGGGTTAGATGATTCCGGAAGCAGA                         GTGCTGAGGCAACTTGACGCAGATGCTCAAGCGCTTGAACGGGAACTCAGG
genomic: ATCGCATCGCTTATAGAACCATGAAAGGGTTAGATGATTCCGGAAGCAGAgtgagtaaca ... cgcactgcagGTGCTGAGGCAACTTGACGCAGATGCTCAAGCGCTTGAACGGGAACTCAGG
EST: gi|100385240|gb|BY950832.1|BY950832
EST:     ATCGCATCGCTTATAGAACCATGAAAGGGT-AGATGATTCCGGAAGCAGA                         GTGCTGAGGCNACTTGACGCAGATGCTCAAGCGCTTGAACGGG
genomic: ATCGCATCGCTTATAGAACCATGAAAGGGTTAGATGATTCCGGAAGCAGAgtgagtaaca ... cgcactgcagGTGCTGAGGCAACTTGACGCAGATGCTCAAGCGCTTGAACGGG
EST: gi|162184006|gb|FC359376.1|FC359376
EST:     ATCGCATCGCTTATAGAACCATGAAAGGGTTAGATGATTCCGGAAGCAGA                         GTGCTGAGGCAACTTGACGCAGATGCTCAAGCGCTTGAACGGGAACTCAGG
genomic: ATCGCATCGCTTATAGAACCATGAAAGGGTTAGATGATTCCGGAAGCAGAgtgagtaaca ... cgcactgcagGTGCTGAGGCAACTTGACGCAGATGCTCAAGCGCTTGAACGGGAACTCAGG
EST: gi|162175772|gb|FC352074.1|FC352074
EST:     ATCGCATCGCTTATAGAACCATGAAAGGGTTAGATGATTCCGGAAGCAGA                         GTGCTGAGGCAACTTGACGCAGATGCTCAAGCGCTTGAACGGGAACTCAGG
genomic: ATCGCATCGCTTATAGAACCATGAAAGGGTTAGATGATTCCGGAAGCAGAgtgagtaaca ... cgcactgcagGTGCTGAGGCAACTTGACGCAGATGCTCAAGCGCTTGAACGGGAACTCAGG