1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgcctgtttttaatgaagaatctctacaaattctgggaattacatgtagatgtaatttgagattgatatttctactattggtacgagttctggatttttggagctcagattttacctgttcagcagAATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAGGTGCTCTACGTAGGCTTGTCGCTGGTCATTGTTTCCTTCATTTGGAGCT
species | Physcomitrella patens |
transcript | PP1S9_480V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCGTCTACGGTCGGCTGCTATTTCAAAGTCTTCCGTGAAGGAGGTAAAG AATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAGEST: gi|37832661|gb|BJ590673.1|BJ590673
genomic: ACCGTCTACGGTCGGCTGCTATTTCAAAGTCTTCCGTGAAGGAGGTAAAGgtatgcctgt ... tgttcagcagAATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAG
EST: CGGTCGGCTGCTATTTCAAAGTCTTCCCGTGAAGGAGGTAAAG AATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAGEST: gi|162184005|gb|FC359375.1|FC359375
genomic: CGGTCGGCTGCTATTTCAAAGTCTT-CCGTGAAGGAGGTAAAGgtatgcctgt ... tgttcagcagAATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAG
EST: ACCGTCTACGGTCGGCTGCTATTTCAAAGTCTTCCGTGAAGGAGGTAAAG AATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAGEST: gi|37829701|gb|BJ587713.1|BJ587713
genomic: ACCGTCTACGGTCGGCTGCTATTTCAAAGTCTTCCGTGAAGGAGGTAAAGgtatgcctgt ... tgttcagcagAATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAG
EST: ACCGTCTACGGTCGGCTGCTATTTCAAAGTCTTCCGTGAAGGAGGTAAAG AATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAGEST: gi|162175773|gb|FC352075.1|FC352075
genomic: ACCGTCTACGGTCGGCTGCTATTTCAAAGTCTTCCGTGAAGGAGGTAAAGgtatgcctgt ... tgttcagcagAATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAG
EST: ACCGTCTACGGTCGGCTGCTATTTCAAAGTCTTCCGTGAAGGAG--AA-- --TGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAGEST: gi|162184006|gb|FC359376.1|FC359376
genomic: ACCGTCTACGGTCGGCTGCTATTTCAAAGTCTTCCGTGAAGGAGGTAAAGgtatgcctgt ... tgttcagcagAATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAG
EST: ACCGTCTACGGTCGGCTGCTATTTCAAAGTCTTCCGTGAAGGAGGTAAAG AATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAGEST: gi|162175772|gb|FC352074.1|FC352074
genomic: ACCGTCTACGGTCGGCTGCTATTTCAAAGTCTTCCGTGAAGGAGGTAAAGgtatgcctgt ... tgttcagcagAATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAG
EST: ACCGTCTACGGTCGGCTGCTATTTCAAAGTCTTCCGTG-A--AGG---AG AATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAG
genomic: ACCGTCTACGGTCGGCTGCTATTTCAAAGTCTTCCGTGAAGGAGGTAAAGgtatgcctgt ... tgttcagcagAATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAG
ctactattggtacgagttctggatttttggagctcagattttacctgttcagcagAATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAGGTGCTCTACGTAGGCTTGTCGCTGGTCATTGTTTCCTTCATTTGGAGCT
ttttacct CT-rich tract
agatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcctgtttttaatgaagaatctctacaaattctgggaattacatgtagatgtaatttgagattgatatttctactattggtacgagttctggatttttggagctcagattttacctgttcagcagAATGTAGCCCTTGCAAGGCCAACCCGGGACTTCAGTAGCAGCTACAGGCAGGTGCTCTACGTAGGCTTGTCGCTGGTCATTGTTTCCTTCATTTGGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT