1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAAGCACAAAAGGAACCGGAAGCCTGGTTTGATCTCAAGGTCAATACGCACGTGTATATTGATGGCCTCCCTGAAGATGCAACTATGGATGAGgtactttcttgttgaaatctcatctacgaccttcgtccgtgatccttgttaagttggatcttacaagatttgtttgtaacgtgatcacgtgcttttctactagatgttcaacctgttcgttggcttcttaattattctttgttgtttttctgcag
species | Physcomitrella patens |
transcript | PP1S9_474V6.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATACGCACGTGTATATTGATGGCCTCCCTGAAGATGCAACTATGGATGAG GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAGEST: gi|100447623|gb|CJ971922.1|CJ971922
genomic: ATACGCACGTGTATATTGATGGCCTCCCTGAAGATGCAACTATGGATGAGgtactttctt ... ttttctgcagGTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAG
EST: ACACGCACGTGTATATTGATGGCCTCCCTGAAGATGCAACTATGGATGAG GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAGEST: gi|208375850|gb|DC926942.1|DC926942
genomic: ATACGCACGTGTATATTGATGGCCTCCCTGAAGATGCAACTATGGATGAGgtactttctt ... ttttctgcagGTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAG
EST: ATACGCACGTGTATATTGATGGCCT-CCTGAAGATGCAACTATGGATGAG GTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAGEST: gi|162161032|gb|FC337030.1|FC337030
genomic: ATACGCACGTGTATATTGATGGCCTCCCTGAAGATGCAACTATGGATGAGgtactttctt ... ttttctgcagGTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAG
EST: ATACGCACGTGTATATTGATGGCCTCCCTGAAGATGCAACTATGGATGAG GTCGTTGAAGTTTTCTCCAA-TGTGGCGTTATCAAGGAG
genomic: ATACGCACGTGTATATTGATGGCCTCCCTGAAGATGCAACTATGGATGAGgtactttctt ... ttttctgcagGTCGTTGAAGTTTTCTCCAAATGTGGCGTTATCAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCACAAAAGGAACCGGAAGCCTGGTTTGATCTCAAGGTCAATACGCACGTGTATATTGATGGCCTCCCTGAAGATGCAACTATGGATGAGgtactttcttgttgaaatctcatctacgaccttcgtccgtgatccttgttaagttggatcttacaagatttgtttgtaacgtgatcacgtgcttttctactagatgttcaacctgttcgttggcttcttaattattctttgttgtttttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG