1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGATAGGAATGTACCACGACTGGTGCGAGCCACACAGCACTTACCCTCGCTCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAGgtatataagtgaatcctttctctcaataattttgttttatcttcccttctgcaagtgtcaaatgttttaaatgccccgaaactttctaagaacttcaaacgtgtgaatcttgtag
species | Physcomitrella patens |
transcript | PP1S9_410V6.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAG ATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGAEST: gi|162191298|gb|FC366872.1|FC366872
genomic: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAGgtatataagt ... aatcttgtagATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGA
EST: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAG ATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGAEST: gi|162260022|gb|FC435325.1|FC435325
genomic: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAGgtatataagt ... aatcttgtagATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGA
EST: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAG ATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGAEST: gi|162239307|gb|FC416537.1|FC416537
genomic: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAGgtatataagt ... aatcttgtagATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGA
EST: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAG ATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGAEST: gi|162260023|gb|FC435326.1|FC435326
genomic: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAGgtatataagt ... aatcttgtagATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGA
EST: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAG ATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGAEST: gi|162190780|gb|FC367042.1|FC367042
genomic: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAGgtatataagt ... aatcttgtagATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGA
EST: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAG ATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGAEST: gi|162181838|gb|FC357437.1|FC357437
genomic: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAGgtatataagt ... aatcttgtagATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGA
EST: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAG ATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGAEST: gi|162182316|gb|FC357187.1|FC357187
genomic: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAGgtatataagt ... aatcttgtagATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGA
EST: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAG ATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGAEST: gi|162191297|gb|FC366871.1|FC366871
genomic: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAGgtatataagt ... aatcttgtagATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGA
EST: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAG ATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGAEST: gi|162239306|gb|FC416536.1|FC416536
genomic: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAGgtatataagt ... aatcttgtagATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGA
EST: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAG ATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGAEST: gi|7584081|gb|AW699979.1|AW699979
genomic: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAGgtatataagt ... aatcttgtagATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGA
EST: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAG ATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGA
genomic: TCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAGgtatataagt ... aatcttgtagATGCAAGACTGTGAACATACTTATGGAGATGGATCGTATCTTGAGGCCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATAGGAATGTACCACGACTGGTGCGAGCCACACAGCACTTACCCTCGCTCATACGACCTGATGCACTCGGATCGCTTGCTGAGCTCACTCTCAGAGAGgtatataagtgaatcctttctctcaataattttgttttatcttcccttctgcaagtgtcaaatgttttaaatgccccgaaactttctaagaacttcaaacgtgtgaatcttgtag
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