1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGCACTGGAAGCGTGTGGTGGAGAAATCATACATGAAAGGATTAGGCATTGACTGGAATTCTATTCGGAAGGTTATGGATATGAAGGCTGGATATGGAGGgtaagtgcgcgctccattgtggacgtacattggtaacaatctgtatattaatttcatgccttatttcttacggtctctttatttcaatttttttccttgc...
species | Physcomitrella patens |
transcript | PP1S9_410V6.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GACTGGAATTCTATTCGGAAGGTTATGGATATGAAGGCTGGATATGGAGG GTTTGCTGCGGCACTTGTTAGTTACCCATTGTGGGTAATGAACATCATCCCEST: gi|162260023|gb|FC435326.1|FC435326
genomic: GACTGGAATTCTATTCGGAAGGTTATGGATATGAAGGCTGGATATGGAGGgtaagtgcgc ... gataatgcagGTTTGCTGCGGCACTTGTTAGTTACCCACTGTGGGTAATGAACATCATCCC
EST: GACTGGAATTCTATTCGGAAGGTTATGGATATGAAGGCTGGATATGGAGG GTTTGCTGCGGCACTTGTTAGTTACCCACTGTGGGTAATGAACATCATCCCEST: gi|162182316|gb|FC357187.1|FC357187
genomic: GACTGGAATTCTATTCGGAAGGTTATGGATATGAAGGCTGGATATGGAGGgtaagtgcgc ... gataatgcagGTTTGCTGCGGCACTTGTTAGTTACCCACTGTGGGTAATGAACATCATCCC
EST: GAAGGTTATGGATATGAAGGCTGGATATGGAGG GTTTGCTGCGGCACTTGTTAGTTACCCATTGTGGGTAATGAACATCATCCCEST: gi|7584081|gb|AW699979.1|AW699979
genomic: GAAGGTTATGGATATGAAGGCTGGATATGGAGGgtaagtgcgc ... gataatgcagGTTTGCTGCGGCACTTGTTAGTTACCCACTGTGGGTAATGAACATCATCCC
EST: GACTGGAATTCTATTCGGAAGGTTATGGATATGAAGGCTGGATATGGAGG GTTTGCTGCGGCACTTGTTAGTTACCCACTGTGGGTAATGAACATCATCCC
genomic: GACTGGAATTCTATTCGGAAGGTTATGGATATGAAGGCTGGATATGGAGGgtaagtgcgc ... gataatgcagGTTTGCTGCGGCACTTGTTAGTTACCCACTGTGGGTAATGAACATCATCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCACTGGAAGCGTGTGGTGGAGAAATCATACATGAAAGGATTAGGCATTGACTGGAATTCTATTCGGAAGGTTATGGATATGAAGGCTGGATATGGAGGgtaagtgcgcgctccattgtggacgtacattggtaacaatctgtatattaatttcatgccttatttcttacggtctctttatttcaatttttttccttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG