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gtaagcattagcatagagcattaaaatgcattcgcccattctcttgatctatgtcgatcctacctagagctcaatggtattatcgatataataacttttctgttggatgcgaatgctgtgctttttgtgtctagaccgagttgcgacgttttaatgtctcgtcaaacttgtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTCAAGATG
species | Physcomitrella patens |
transcript | PP1S9_386V6.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|208390138|gb|DC949448.1|DC949448
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|208348679|gb|DC926354.1|DC926354
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|208369414|gb|DC948180.1|DC948180
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|67727457|gb|BJ977716.1|BJ977716
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|37853178|gb|BJ611186.1|BJ611186
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|67724605|gb|BJ974864.1|BJ974864
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|67726167|gb|BJ976426.1|BJ976426
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|162275961|gb|FC452029.1|FC452029
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|67712898|gb|BJ966347.1|BJ966347
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|37827224|gb|BJ585236.1|BJ585236
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|22131921|gb|BQ826881.1|BQ826881
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGCCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|162261283|gb|FC437300.1|FC437300
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|37834841|gb|BJ592853.1|BJ592853
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|208364064|gb|DC950384.1|DC950384
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|162164760|gb|FC340482.1|FC340482
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|162168429|gb|FC344106.1|FC344106
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|162275168|gb|FC451755.1|FC451755
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: TCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|162249193|gb|FC421536.1|FC421536
genomic: TCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|67727845|gb|BJ978104.1|BJ978104
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|208395724|gb|DC924218.1|DC924218
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|208371038|gb|DC955914.1|DC955914
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGTTCTTEST: gi|37840179|gb|BJ598187.1|BJ598187
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|37837481|gb|BJ595489.1|BJ595489
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: AATGGGAGGAGGGNCCTGGGGGCATNGACATGAGCAAGATTNTTAAT GACCCAGAACTTATGGNTGCATTTTNTGATCCAGAAGTTATGGCAGCTCTTEST: gi|162150302|gb|FC326387.1|FC326387
genomic: AATGGGAGGAGGG-CCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGACAGCTCTTEST: gi|162163556|gb|FC339466.1|FC339466
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|67720699|gb|BJ970958.1|BJ970958
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|37834379|gb|BJ592391.1|BJ592391
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|208354412|gb|DC926603.1|DC926603
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|67720996|gb|BJ971255.1|BJ971255
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CCTGGGGGCATCGACATGAGCAAGATTCTTAAC GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|15319994|gb|BI487356.1|BI487356
genomic: CCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: GAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|162275169|gb|FC451756.1|FC451756
genomic: GAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: TCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTEST: gi|162168430|gb|FC344107.1|FC344107
genomic: TCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
EST: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAAT GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
genomic: CGGGAATGGGAGGAGGGCCTGGGGGCATCGACATGAGCAAGATTCTTAATgtaagcatta ... gtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTT
ttgtgtctagaccgagttgcgacgttttaatgtctcgtcaaacttgtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTCAAGATG
ttttaat putative branch site (score: 3)
ttttaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcattagcatagagcattaaaatgcattcgcccattctcttgatctatgtcgatcctacctagagctcaatggtattatcgatataataacttttctgttggatgcgaatgctgtgctttttgtgtctagaccgagttgcgacgttttaatgtctcgtcaaacttgtgatcgcagGACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTCAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG