Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctttacgtcatgactgcagcatcaaagttgattttaaaatgaccttatgaaggcttatttacagttcctcttatacagggccagtcgatcaattgacgttctgtaacatttctatgctctctccctgtcgtatatctagGTTGAGCCAAATGCGCACAAAATTGAAGAACACCGAAGGAAGTACGACCGTTTGCGGAAAGAGCGCAATGAAAAAAGAGCGGCTCGGGAAAGGGAACAAC

Basic information

species Physcomitrella patens
transcript PP1S9_386V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162168430|gb|FC344107.1|FC344107
EST:     TGGCATGTCGACTTGACTATGATGAGGGGACTGCCCAGGTTCTTAAAAAG                         GTTGAGCCAAATGCGCACAAAATTGAAGAACACCGAAGGAAGTACGACCGT
genomic: TGGCATGTCGACTTGACTATGATGAGGGGACTGCCCAGGTTCTTAAAAAGgtatctttac ... gtatatctagGTTGAGCCAAATGCGCACAAAATTGAAGAACACCGAAGGAAGTACGACCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgatcaattgacgttctgtaacatttctatgctctctccctgtcgtatatctagGTTGAGCCAAATGCGCACAAAATTGAAGAACACCGAAGGAAGTACGACCGTTTGCGGAAAGAGCGCAATGAAAAAAGAGCGGCTCGGGAAAGGGAACAAC
                ctgtaac  putative branch site (score: 3)
                                ctctctccctgtcgt  putative PPT
                   taacattt  TA-rich tract