1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTCTGTAGAAATATCTAACGAACCGGACCCAGATGAGATAGCAGGAGAGATAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAGgtaaattcaatgcttgtgaaggttctgctttggagttatgtcgtgtaccttcgccactgaggatttgaggctatttattactgcagagctttgaggattttacattttcatgtattgacgagtctactctcgaatctctttcaaacattttactgttttcaaggtctaaacgcgattgtttgcttgaatag
species | Physcomitrella patens |
transcript | PP1S9_381V6.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAG AATGCAAGAATGGAGCCCGATCCAGACGACGCATTGCAACACAGTGAGGAGEST: gi|162166462|gb|FC343159.1|FC343159
genomic: TAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAGgtaaattcaa ... gcttgaatagAATGCAAGAATGGAGCCCGATCCAGACGACGCATTGCAACACAGTGAGGAG
EST: TAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAG AATGCAAGAATGGAGCCCGATCCAGACGACGCATTGCAACACAGTGAGGAGEST: gi|162164287|gb|FC342102.1|FC342102
genomic: TAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAGgtaaattcaa ... gcttgaatagAATGCAAGAATGGAGCCCGATCCAGACGACGCATTGCAACACAGTGAGGAG
EST: TAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAG AATGCAAGAATGGAGCCCGATCCAGACGACGCATTGCAACACAGTGAGGAGEST: gi|162157674|gb|FC332996.1|FC332996
genomic: TAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAGgtaaattcaa ... gcttgaatagAATGCAAGAATGGAGCCCGATCCAGACGACGCATTGCAACACAGTGAGGAG
EST: TAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAG AATGCAAGAATGGAGCCCGATCCAGACGACGCATTGCAACACAGTGAGGAGEST: gi|100413113|gb|BY992593.1|BY992593
genomic: TAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAGgtaaattcaa ... gcttgaatagAATGCAAGAATGGAGCCCGATCCAGACGACGCATTGCAACACAGTGAGGAG
EST: TAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAG AATGCAAGAATGGAGCCCGATCCAGACGACGCATTGCAACACAGTGAGGAGEST: gi|162159143|gb|FC334314.1|FC334314
genomic: TAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAGgtaaattcaa ... gcttgaatagAATGCAAGAATGGAGCCCGATCCAGACGACGCATTGCAACACAGTGAGGAG
EST: TAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAG AATGCAAGAATGGAGCCCGATCCAGACGACGCATTGCAACACAGTGAGGAGEST: gi|162245447|gb|FC421349.1|FC421349
genomic: TAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAGgtaaattcaa ... gcttgaatagAATGCAAGAATGGAGCCCGATCCAGACGACGCATTGCAACACAGTGAGGAG
EST: TAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAG AATGCAAGAATGGAGCCCGATCCAGACGACGCATTGCAACACAGTGAGGAG
genomic: TAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAGgtaaattcaa ... gcttgaatagAATGCAAGAATGGAGCCCGATCCAGACGACGCATTGCAACACAGTGAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTGTAGAAATATCTAACGAACCGGACCCAGATGAGATAGCAGGAGAGATAGTGGTTACTGCAGAGGGTCAAGCGACAGGAAGGGAGCTTAACGATCAGgtaaattcaatgcttgtgaaggttctgctttggagttatgtcgtgtaccttcgccactgaggatttgaggctatttattactgcagagctttgaggattttacattttcatgtattgacgagtctactctcgaatctctttcaaacattttactgttttcaaggtctaaacgcgattgtttgcttgaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT