1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcatgaagaatatctttgtagctttacttgtgttatccatactagtgcgttttggttttgagtatcatgttgctcatcttacaagttattgattgtgcagGTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGCAACTGCCCAGAGAGCTGGAATATCGGAGCCAGACCCAGATGAATCAATG
species | Physcomitrella patens |
transcript | PP1S9_381V6.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAG GTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTTCGEST: gi|162185271|gb|FC361781.1|FC361781
genomic: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAGgtatgaaact ... gattgtgcagGTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTT-CG
EST: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAG GTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGCEST: gi|162156502|gb|FC332110.1|FC332110
genomic: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAGgtatgaaact ... gattgtgcagGTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGC
EST: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAG GTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGCEST: gi|162163549|gb|FC339459.1|FC339459
genomic: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAGgtatgaaact ... gattgtgcagGTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGC
EST: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAG GTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGCEST: gi|162157674|gb|FC332996.1|FC332996
genomic: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAGgtatgaaact ... gattgtgcagGTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGC
EST: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAG GTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGCEST: gi|162244461|gb|FC422634.1|FC422634
genomic: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAGgtatgaaact ... gattgtgcagGTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGC
EST: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAG GTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGCEST: gi|100413113|gb|BY992593.1|BY992593
genomic: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAGgtatgaaact ... gattgtgcagGTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGC
EST: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAG GTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGCEST: gi|162159143|gb|FC334314.1|FC334314
genomic: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAGgtatgaaact ... gattgtgcagGTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGC
EST: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAG GTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGCEST: gi|162257437|gb|FC433311.1|FC433311
genomic: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAGgtatgaaact ... gattgtgcagGTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGC
EST: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAG GTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGCEST: gi|162245447|gb|FC421349.1|FC421349
genomic: TTACCTTCATCAAACATTAGAAGTACAGCCGCTCAAGCTGCAATAATGAGgtatgaaact ... gattgtgcagGTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGC
EST: GAAGTACAGCCGCTCAAGCTGCAATAATGAG GTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGC
genomic: GAAGTACAGCCGCTCAAGCTGCAATAATGAGgtatgaaact ... gattgtgcagGTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGC
tgcgttttggttttgagtatcatgttgctcatcttacaagttattgattgtgcagGTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGCAACTGCCCAGAGAGCTGGAATATCGGAGCCAGACCCAGATGAATCAATG
tattgat putative branch site (score: 14)
ttattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgaagaatatctttgtagctttacttgtgttatccatactagtgcgttttggttttgagtatcatgttgctcatcttacaagttattgattgtgcagGTTGGAGCAAAACAAGCAGACTTCCGAACTATCGAAGGCTGATGTCTTCGCAACTGCCCAGAGAGCTGGAATATCGGAGCCAGACCCAGATGAATCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG