1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgataccggcaagttggccatttcgatttgtaactttggattcagtaagcttccaaattaatgaagcactcaggataaaatgtatgggtactgtattggaaaagacttgatgtatattctaaaaaatatttacgcatttcctgtatgtgtagAATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGCTTTCGCAAGTACGAGAGTATGAAGAAAACATTGTTACACGAATTG
species | Physcomitrella patens |
transcript | PP1S9_381V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAG AATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGCEST: gi|162156502|gb|FC332110.1|FC332110
genomic: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAGgtgataccgg ... gtatgtgtagAATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
EST: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAG AATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGCEST: gi|162163549|gb|FC339459.1|FC339459
genomic: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAGgtgataccgg ... gtatgtgtagAATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
EST: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAG AATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGCEST: gi|162167395|gb|FC343098.1|FC343098
genomic: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAGgtgataccgg ... gtatgtgtagAATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
EST: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAG AATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGCEST: gi|162244461|gb|FC422634.1|FC422634
genomic: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAGgtgataccgg ... gtatgtgtagAATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
EST: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAG AATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGCEST: gi|162257437|gb|FC433311.1|FC433311
genomic: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAGgtgataccgg ... gtatgtgtagAATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
EST: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAG AATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
genomic: CAGTCGGCTATGTGGGCATTAGTCCGAAGTGCCTTCTCGGGTTTAACAAGgtgataccgg ... gtatgtgtagAATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGC
ggaaaagacttgatgtatattctaaaaaatatttacgcatttcctgtatgtgtagAATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGCTTTCGCAAGTACGAGAGTATGAAGAAAACATTGTTACACGAATTG
ttctaaa putative branch site (score: 24)
tttcctgt putative PPT
acttgatgtatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgataccggcaagttggccatttcgatttgtaactttggattcagtaagcttccaaattaatgaagcactcaggataaaatgtatgggtactgtattggaaaagacttgatgtatattctaaaaaatatttacgcatttcctgtatgtgtagAATCGGGGGCAAGAGATATCTCTACGACTGCGGACGGATGACTTGCGAGGCTTTCGCAAGTACGAGAGTATGAAGAAAACATTGTTACACGAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA