1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caagaatttacgaggttacaacttaaggattgggttcagataactaataagctgttcaatttcgagtggagtatactaacgatgaccgaaatgaatgcagGGGCAGTGGAAGTCCTGCAAGCCGTTGGCTTCACTGATGGAGGGAGTCCTCTAGGCTCAGGTGGCACTGATTGCTTAGTTCTTAAGAGGTCGGACCCAGG
species | Physcomitrella patens |
transcript | PP1S9_381V6.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG GGGCAGTGGAAGTCCTGCAAGCCGTTGGCTTCACTGATGGAGGGAGTCCTCEST: gi|37848308|gb|BJ606316.1|BJ606316
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... atgaatgcagGGGCAGTGGAAGTCCTGCAAGCCGTTGGCTTCACTGATGGAGGGAGTCCTC
EST: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG GGGCAGTGGAAGTCCTGCAAGCCGTTGGCTTCACTGATGGAGGGAGTCCTCEST: gi|162164286|gb|FC342101.1|FC342101
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... atgaatgcagGGGCAGTGGAAGTCCTGCAAGCCGTTGGCTTCACTGATGGAGGGAGTCCTC
EST: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG GGGCAGTGGAAGTCCTGCAAGCCGTTGGCTTCACTGATGGAGGGAGTCCTCEST: gi|162153921|gb|FC329428.1|FC329428
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... atgaatgcagGGGCAGTGGAAGTCCTGCAAGCCGTTGGCTTCACTGATGGAGGGAGTCCTC
EST: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG GGGCAGTGGAAGTCCTGCAAGCCGTTGGCTTCACTGATGGAGGGAGTCCTCEST: gi|162165438|gb|FC340874.1|FC340874
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... atgaatgcagGGGCAGTGGAAGTCCTGCAAGCCGTTGGCTTCACTGATGGAGGGAGTCCTC
EST: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAG GGGCAGTGGAAGTCCTGCAAGCCGTTGGCTTCACTGATGGAGGGAGTCCTC
genomic: GAATGTCATCGACCATCCGAATGAAGACAAATATCGACGCCTTCGGAAGgtaagtcgtg ... atgaatgcagGGGCAGTGGAAGTCCTGCAAGCCGTTGGCTTCACTGATGGAGGGAGTCCTC
aataagctgttcaatttcgagtggagtatactaacgatgaccgaaatgaatgcagGGGCAGTGGAAGTCCTGCAAGCCGTTGGCTTCACTGATGGAGGGAGTCCTCTAGGCTCAGGTGGCACTGATTGCTTAGTTCTTAAGAGGTCGGACCCAGG
tactaac putative branch site (score: 28)
ttcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagaatttacgaggttacaacttaaggattgggttcagataactaataagctgttcaatttcgagtggagtatactaacgatgaccgaaatgaatgcagGGGCAGTGGAAGTCCTGCAAGCCGTTGGCTTCACTGATGGAGGGAGTCCTCTAGGCTCAGGTGGCACTGATTGCTTAGTTCTTAAGAGGTCGGACCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG