1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGCATCGGTTGGAGTTGCTGCCAAAGCAAAGTTTGATGTGCACTCGTACTTCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagattttaaatcctttccattcattttcatgggcaaccctatgtttggattcttaagttgtatgtctcactgatgtctacatattcgtgtgaaaatg...
species | Physcomitrella patens |
transcript | PP1S9_370V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTA TCATTCATTCTATTCTGGACEST: gi|67572154|gb|BJ944978.1|BJ944978
genomic: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagatttt ... gctgggacagTCATTCATTCTATTCTGGAC
EST: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTA TCATTCATTCTATTCTGGACEST: gi|37847521|gb|BJ605529.1|BJ605529
genomic: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagatttt ... gctgggacagTCATTCATTCTATTCTGGAC
EST: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTA TCATTCATTCTATTCTGGACEST: gi|162265591|gb|FC441073.1|FC441073
genomic: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagatttt ... gctgggacagTCATTCATTCTATTCTGGAC
EST: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTA TCATTCATTCTATTCTGGACEST: gi|18372180|gb|BJ203782.1|BJ203782
genomic: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagatttt ... gctgggacagTCATTCATTCTATTCTGGAC
EST: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTA TCATTCATTCTATTCTGGACEST: gi|162265590|gb|FC441072.1|FC441072
genomic: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagatttt ... gctgggacagTCATTCATTCTATTCTGGAC
EST: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTA TCATTCATTCTATTCTGGACEST: gi|67695522|gb|BJ955755.1|BJ955755
genomic: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagatttt ... gctgggacagTCATTCATTCTATTCTGGAC
EST: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTA TCATTCATTCTATTCTGGACEST: gi|162265967|gb|FC442970.1|FC442970
genomic: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagatttt ... gctgggacagTCATTCATTCTATTCTGGAC
EST: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTA TCATTCATTCTATTCTGGACEST: gi|18368218|gb|BJ200303.1|BJ200303
genomic: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagatttt ... gctgggacagTCATTCATTCTATTCTGGAC
EST: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTA TCATTCATTCTATTCTGGACEST: gi|18365284|gb|BJ197358.1|BJ197358
genomic: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagatttt ... gctgggacagTCATTCATTCTATTCTGGAC
EST: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTA TCATTCATTCTATTCTGGACEST: gi|18334246|gb|BJ166262.1|BJ166262
genomic: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagatttt ... gctgggacagTCATTCATTCTATTCTGGAC
EST: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTA TCATTCATTCTATTCTGGACEST: gi|18342795|gb|BJ174831.1|BJ174831
genomic: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagatttt ... gctgggacagTCATTCATTCTATTCTGGAC
EST: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTA TCATTCATTCTATTCTGGACEST: gi|208353048|gb|DC921834.1|DC921834
genomic: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagatttt ... gctgggacagTCATTCATTCTATTCTGGAC
EST: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTA TCATTCATTCTATTCTGGACEST: gi|37821939|gb|BJ580005.1|BJ580005
genomic: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagatttt ... gctgggacagTCATTCATTCTATTCTGGAC
EST: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTA TCATTCATTCTATTCTGGACEST: gi|208397460|gb|DC916372.1|DC916372
genomic: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagatttt ... gctgggacagTCATTCATTCTATTCTGGAC
EST: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTA TCATTCATTCTATTCTGGAC
genomic: TCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagatttt ... gctgggacagTCATTCATTCTATTCTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATCGGTTGGAGTTGCTGCCAAAGCAAAGTTTGATGTGCACTCGTACTTCGATTCATGGAACCGCATTCTCTTTGATGGCATTGGGCAAGGCTTGCTAgtgagattttaaatcctttccattcattttcatgggcaaccctatgtttggattcttaagttgtatgtctcactgatgtctacatattcgtgtgaaaatg
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