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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctcaaacctcacaagaagccgaataccctactgctctccatatttgacaatcgtgtgttaccaccgtagactgaattggtacaaatatgtaataatggtgaattcgtggtgggttgtgtctgtagCCTCGGCCTGTTACGGTAACGACCCAAACCAGTTCCCTGCCAATAGGTTCTTCGCGGCAGGAGGCGACAGCAGCAACGCGAACATCTGGGACAACAGAAA

Basic information

species Physcomitrella patens
transcript PP1S97_66V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18346511|gb|BJ178555.1|BJ178555
EST:     TTCCGGTGGAAAAACTGGTTTAGCATCTTTCTACGGGCCCGTATACCTTC                         CCTCGGCCTGTTACGGTAACGACCCAAACCAGTTCCCTGCCAATAGGTTCT
genomic: TTCCGGTGGAAAAACTGGTTTAGCATCTTTCTACGGGCCCGTATACCTTCgtaagttctc ... gtgtctgtagCCTCGGCCTGTTACGGTAACGACCCAAACCAGTTCCCTGCCAATAGGTTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaattggtacaaatatgtaataatggtgaattcgtggtgggttgtgtctgtagCCTCGGCCTGTTACGGTAACGACCCAAACCAGTTCCCTGCCAATAGGTTCTTCGCGGCAGGAGGCGACAGCAGCAACGCGAACATCTGGGACAACAGAAA
         tacaaatatgtaataa  TA-rich tract