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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctaccaccattttatacccggcgccaatgcttattgaaacccctttttgcattgaccaacaggccctattttacgtacacttttgttgcaacttcttccggaggactcgtagcacttaactgtgttgccatgtgttgccatgattgcagTTGACAACGGCATCTAACAGACATTGGACCCATTTCTGCCGCTTCGACTGATATGTTAG

Basic information

species Physcomitrella patens
transcript PP1S97_57V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18357214|gb|BJ189273.1|BJ189273
EST:     GAGTTGACTAACGATACCGGGCGAATCAGTTACTGTGGGACGAAGTGCTG                         TTGACAACGGCATCTAACAGACATTGGACCCATTTCTGCCGCTTCGACTGA
genomic: GAGTTGACTAACGATACCGGGCGAATCAGTTACTGTGGGACGAAGTGCTGgtatctacca ... atgattgcagTTGACAACGGCATCTAACAGACATTGGACCCATTTCTGCCGCTTCGACTGA
EST: gi|18347221|gb|BJ179267.1|BJ179267
EST:     GAGTTGACTAACGATACCGGGCGAATCAGTTACTGTGGGACGAAGTGCTG                         TTGACAACGGCATCTAACAGACATTGGACCCATTTCTGCCGCTTCGACTGA
genomic: GAGTTGACTAACGATACCGGGCGAATCAGTTACTGTGGGACGAAGTGCTGgtatctacca ... atgattgcagTTGACAACGGCATCTAACAGACATTGGACCCATTTCTGCCGCTTCGACTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttccggaggactcgtagcacttaactgtgttgccatgtgttgccatgattgcagTTGACAACGGCATCTAACAGACATTGGACCCATTTCTGCCGCTTCGACTGATATGTTAG
                   acttaac  putative branch site (score: 3)