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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTGCACGGACGAGCAGAAGCAGAAGGGTATCATGGAGGAGATATTGCGTTCCACTTGTACTCTGGCTCAGGACCAATACGGCAACTATGTTGTGCAGgtgggggtgtgtgtgtcgggcgtgttggcagtcggtgattgtggggcaggcgtatggttagacgaagtttgtagttgggtttctgggagtgcaggtatgg...

Basic information

species Physcomitrella patens
transcript PP1S96_109V6.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S96_110V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GRMZM2G042623_T02 (Zea mays), 5'ss of exon 7
GCATTGCACGGACGAGCAGAAGCAGAAGGGTATCATGGAGGAGATATTGCGTTCCACTTGTACTCTGGCTCAGGACCAATACGGCAACTATGTTGTGCAGgtgggg---gtgtgtgtgtcgggcgtgttggcagtcggtgattgtggggcaggcgtatggttagacgaagtttgtagttgggtttctgggagtgcaggtatgg
||||||    ||     | |  ||| |    || ||||| |||||  | |  ||   |||    |||||||||||||| || |||||||||||||| |||||  |     |||     |  |     |   ||  | ||   |||    | ||  | || |  | ||   | || |||    | ||| ||     | || || 
GCATTGTGATGATCCTAAAACACAGCAAATAATGATGGATGAGATTCTCCAGTCTGTTTGCTTGCTGGCTCAGGACCAGTATGGCAACTATGTTGTTCAGgtcagttccatgttcagttttgaaagatgtacatgctgtacctgtctacctggt-tgtg-tgggccgtgttgtgcagtaacatctctaggctattatgt-tga

upper sequence: PP1S96_110V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ20967 (Selaginella moellendorffii), 5'ss of exon 4
GCATTGCACGGACGAGCAGAAGCAGAAGGGTATCATGGAGGAGATATTGCGTTCCACTTGTACTCTGGCTCAGGACCAATACGGCAACTATGTTGTGCAGgtgggg-gtgtgtgtgtcgggcgtgttggcagtcggtga---ttgtggggcaggcgtatggttagacgaagtttgtagttgggtttctgggagtgcaggtatgg
|||||| || ||||| ||||||||| | || || ||| | |||||| |||| || ||||| | ||| ||||||||||| || || ||||||||||||||||| ||  |||| | | |      | ||     |   |     || |    | || ||   || |  | |||| | |  ||| || |||                
GCATTGTACAGACGAACAGAAGCAGCAAGGAATAATGCAAGAGATACTGCGGTCAACTTGCAGTCTTGCTCAGGACCAGTATGGGAACTATGTTGTGCAGgttggttgtgtttctttttcttttcttcctttttaatttcctttctttctctggtgtgctgt-aagctaagtctttctttgtgtctctttag------------

upper sequence: PP1S96_110V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ32290 (Selaginella moellendorffii), 5'ss of exon 4
GCATTGCACGGACGAGCAGAAGCAGAAGGGTATCATGGAGGAGATATTGCGTTCCACTTGTACTCTGGCTCAGGACCAATACGGCAACTATGTTGTGCAGgtgggg---gtgtgtgtgtcgggcgtgttggcagtcggtgattgtggggcaggcgtatggttagacgaagtttgtagttgggtttctgggagtgcaggtatgg
|||||| || ||||| ||||| ||| | || || ||| | |||||| |||| || ||||| | ||| ||||||||||| || || ||||||||||||||||| ||    || | | |      | |  |            || |    | || ||   || |  | |||| | |  ||| || |||                
GCATTGTACAGACGAACAGAAACAGCAAGGAATAATGCAAGAGATACTGCGATCAACTTGCAGTCTTGCTCAGGACCAGTATGGGAACTATGTTGTGCAGgttggttctgtttcttttcttttcttcctttttaatttcctttctttctctggggtgctgt-aagctaagtctttctttgtgtctctttag------------