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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggcgtggtgtggaagggtttttccaggcatggtttgtgctgggcaaaggtttgctgaggtttgggtgtgtgtgcggcttgtttatggtgtgttgttcagCATGTGCTTGAGCATGGACGAGATCACGAGAGAAGCGAGATCATCACAAAGCTTGCGGGGCAAATTGTACAAATGAGTCAGCACAAGTTTGCATCGAACG

Basic information

species Physcomitrella patens
transcript PP1S96_109V6.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S96_110V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: EFJ36402 (Selaginella moellendorffii), 3'ss of exon 5
gggcgtggtgtggaagggtttttccaggcatggtttgtgctgggcaaaggtttgctgaggtttgggtgtgtgtgcggcttgtttatggtgtgttgttcagCATGTGCTTGAGCATGGACGAGATCACGAGAGAAGCGAGATCATCACAAAGCTTGCGGGGCAAATTGTACAAATGAGTCAGCACAAGTTTGCATCGAACG
                                ||   | |  ||    | |||  || || ||  || | ||    | |||||  |    | |||| ||||| ||  | || |||||   |   || ||||| |||||||| || || ||||| || ||||| |||||||| ||||| ||||||||||| || ||||| |
--------------------------------gtaaatccaaggtg--gctttattgcggattctgtttttg-attgtttgtt-gtaa-attttgtgcagCACGTTTTGGAACATGGGAAACCCCATGAGAGGAGCGAGATAATAACTAAGCTGGCCGGGCAGATTGTACAGATGAGCCAGCACAAGTTCGCTTCGAATG

upper sequence: PP1S96_110V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: EFJ20967 (Selaginella moellendorffii), 3'ss of exon 4
gggcgtggtgtggaagggtttttccaggcatggtttgtgctgggcaaaggtttgctgaggtttgggtgtgtgtgcggcttgtttatggtgtgttgttcagCATGTGCTTGAGCATGGACGAGATCACGAGAGAAGCGAGATCATCACAAAGCTTGCGGGGCAAATTGTACAAATGAGTCAGCACAAGTTTGCATCGAACG
    || |  ||      ||||||    | |  ||| |  |   |     ||  |||  ||   | |||  |    |  | | | || |||  | || |||||||| | |||||||||    | |  ||||||||||| |||||||| ||||| || || ||||||||||||||||| ||||| || |||||||| || |
----gttggttgtgtttctttttcttttcttcctttttaatttcctttctttctctggtgt---gctgtaagctaagtctttctttg-tgt-ctctttagCATGTGTTGGAGCATGGAACCCAGCCGGAGAGAAGCGAAATCATCACTAAGCTAGCAGGACAAATTGTACAAATGAGCCAGCATAAATTTGCATCAAATG

upper sequence: PP1S96_110V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: EFJ32290 (Selaginella moellendorffii), 3'ss of exon 4
gggcgtggtgtggaagggtttttccaggcatggtttgtgctgggcaaaggtttgctgaggtttgggtgtgtgtgcggcttgtttatggtgtgttgttcagCATGTGCTTGAGCATGGACGAGATCACGAGAGAAGCGAGATCATCACAAAGCTTGCGGGGCAAATTGTACAAATGAGTCAGCACAAGTTTGCATCGAACG
    || | ||        |||||    | |  ||| |  |   |     ||  ||| |||   | |||  |    |  | | | || |||  | || |||||||| | |||||||||    | |  ||||||||||| |||||||| ||||| || || ||||||||||||||||| ||||| || |||||||| || |
----gttg-gttctgtttcttttcttttcttcctttttaatttcctttctttctctggggt---gctgtaagctaagtctttctttg-tgt-ctctttagCATGTGTTGGAGCATGGAACCCAGCCGGAGAGAAGCGAAATCATCACTAAGCTAGCAGGACAAATTGTACAAATGAGCCAGCATAAATTTGCATCAAATG

upper sequence: PP1S96_110V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: EFJ35801 (Selaginella moellendorffii), 3'ss of exon 4
gggcgtggtgtggaagggtttttccaggcatggtttgtgctgggcaaaggtttgctgaggtttgggtgtgtgtgcggcttgtttatggtgtgttgttcagCATGTGCTTGAGCATGGACGAGATCACGAGAGAAGCGAGATCATCACAAAGCTTGCGGGGCAAATTGTACAAATGAGTCAGCACAAGTTTGCATCGAACG
                                ||  || |  ||    | |||  || || ||  || | ||    | |||||  |    | |||| ||||| ||  | || |||||   |   || ||||| |||||||| || || ||||| || ||||| |||||||| ||||| ||||||||||| || ||||| |
--------------------------------gtaagtccaaggtg--gctttattgcggattctgtttttg-attgtttgtt-gtaa-attttgtgcagCACGTTTTGGAACATGGGAAACCCCATGAGAGGAGCGAGATAATAACTAAGCTGGCCGGGCAGATTGTACAGATGAGCCAGCACAAGTTCGCTTCGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaggtttgctgaggtttgggtgtgtgtgcggcttgtttatggtgtgttgttcagCATGTGCTTGAGCATGGACGAGATCACGAGAGAAGCGAGATCATCACAAAGCTTGCGGGGCAAATTGTACAAATGAGTCAGCACAAGTTTGCATCGAACG
                                 ttgtttat  TA-rich tract