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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcttagatcttctctgaatacttctttagtgattaatttcatgctccgaagcttggtttttggttgggattatacaccagagaatatcttggaatgttccggtagtatatttattaagttatatttttcagGGATGTTGGGGAATGAGGAACAGAAACAAAAGTATCTACCGAGTCTTGCTCGTTTTGATACTATTGGTTGTTGG

Basic information

species Physcomitrella patens
transcript PP1S95_81V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100409234|gb|BY991912.1|BY991912
EST:     CTGTTGCACTTTTGCTCTTGTGCACTCCAGCCTGTGCATGTCCACCATCG                         GGATGTTGGGGAATGAGGAACAGAAACAAAAGTATCTACCGAGTCTTGCTC
genomic: CTGTTGCACTTTTGCTCTTGTGCACTCCAGCCTGTGCATGTCCACCATCGgtacgcttag ... tatttttcagGGATGTTGGGGAATGAGGAACAGAAACAAAAGTATCTACCGAGTCTTGCTC
EST: gi|100357004|gb|BY983645.1|BY983645
EST:     CTGTTGCACTTTTGCTCTTGTGCACTCCAGCCTGTGCATGTCCACCATCG                         GGATGTTGGGGAATGAGGAACAGAAACAAAAGTATCTACCGAGTCTTGCTC
genomic: CTGTTGCACTTTTGCTCTTGTGCACTCCAGCCTGTGCATGTCCACCATCGgtacgcttag ... tatttttcagGGATGTTGGGGAATGAGGAACAGAAACAAAAGTATCTACCGAGTCTTGCTC
EST: gi|100410518|gb|BY992142.1|BY992142
EST:     CTGTTGCACTTTTGCTCTTGTGCACTCCAGCCTGTGCATGTCCACCATCG                         GGATGTTGGGGAATGAGGAACAGAAACAAAAGTATCTACCGAGTCTTGCTC
genomic: CTGTTGCACTTTTGCTCTTGTGCACTCCAGCCTGTGCATGTCCACCATCGgtacgcttag ... tatttttcagGGATGTTGGGGAATGAGGAACAGAAACAAAAGTATCTACCGAGTCTTGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagagaatatcttggaatgttccggtagtatatttattaagttatatttttcagGGATGTTGGGGAATGAGGAACAGAAACAAAAGTATCTACCGAGTCTTGCTCGTTTTGATACTATTGGTTGTTGG
                                             tatttttc  CT-rich tract
                          tagtatatttattaag  TA-rich tract