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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaccagtcacccaaccctacccggggggttgaaacagtaaaccgttcccgggtattgggatgctgcccccttattgatacccggatgttctcatgtttagACCTCTCATGTCCAACCCCAGCACAGGTGGGACTGGTAA

Basic information

species Physcomitrella patens
transcript PP1S77_46V6.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccgggtattgggatgctgcccccttattgatacccggatgttctcatgtttagACCTCTCATGTCCAACCCCAGCACAGGTGGGACTGGTAA
                          tattgat  putative branch site (score: 3)
                                        tgttctc  putative PPT
                         ttattgata  TA-rich tract