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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCTTTGCTTCCAGTGGCTCTAGATGTGTTCGCGGAGGAGTCTCAGTGTATAGTTGTGGTGCTGCAACGAGGTTGAGGTTCTTCGATTGGACTGCAGgtttcctacggggttgaaactgagcagcttgcttgatccttgtcagtattttttttctttttttcttccatttcgctcacgtgatgcttgtttttttttt...

Basic information

species Physcomitrella patens
transcript PP1S77_293V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162231656|gb|FC407638.1|FC407638
EST:     GTATAGTTGTGGTGCTGGAACGAGGTTGAGGTTCTTCGATTGGACTGCAG                         ATTTGAAGCTATGACGTTACCCAGCTTGTGGCCTGGCATGTTGGACTTGTG
genomic: GTATAGTTGTGGTGCTGCAACGAGGTTGAGGTTCTTCGATTGGACTGCAGgtttcctacg ... gacaccacagATTTGAAGCTATGACGTTACCCAGCTTGTGGCCTGGCATGTTGGACTTGTG
EST: gi|67694807|gb|BJ955040.1|BJ955040
EST:     TTCGATTGGACTGCAG                         ATTTGAAGCTATGACGTTACCCAGCTTGTGGCCTGGCATGTTGGACTTGTG
genomic: TTCGATTGGACTGCAGgtttcctacg ... gacaccacagATTTGAAGCTATGACGTTACCCAGCTTGTGGCCTGGCATGTTGGACTTGTG
EST: gi|162230514|gb|FC407130.1|FC407130
EST:     GTATAGTTGTGGTGCTGGAACGAGGTTGAGGTTCTTCGATTGGACTGCAG                         ATTTGAAGCTATGACGTTACCCAGCTTGTGGCCTGGCATGTTGGACTTGTG
genomic: GTATAGTTGTGGTGCTGCAACGAGGTTGAGGTTCTTCGATTGGACTGCAGgtttcctacg ... gacaccacagATTTGAAGCTATGACGTTACCCAGCTTGTGGCCTGGCATGTTGGACTTGTG
EST: gi|100362195|gb|BY947237.1|BY947237
EST:     GTATAGTTGTGGTGCTGCAACGAGGTTGAGGTTCTTCGATTGGACTGCAG                         ATTTGAAGCTATGACGTTACCCAGCTTGTGGCCTGGCATGTTGGACTTGTG
genomic: GTATAGTTGTGGTGCTGCAACGAGGTTGAGGTTCTTCGATTGGACTGCAGgtttcctacg ... gacaccacagATTTGAAGCTATGACGTTACCCAGCTTGTGGCCTGGCATGTTGGACTTGTG
EST: gi|162230513|gb|FC407129.1|FC407129
EST:     GTATAGTTGTGGTGCTGGAACGAGGTTGAGGTTCTTCGATTGGACTGCAG                         ATTTGAAGCTATGACGTTACCCAGCTTGTGGCCTGGCATGTTGGACTTGTG
genomic: GTATAGTTGTGGTGCTGCAACGAGGTTGAGGTTCTTCGATTGGACTGCAGgtttcctacg ... gacaccacagATTTGAAGCTATGACGTTACCCAGCTTGTGGCCTGGCATGTTGGACTTGTG
EST: gi|67571471|gb|BJ944295.1|BJ944295
EST:     GTATAGTTGTGGTGCTGCAACGAGGTTGAGGTTCTTCGATTGGACTGCAG                         ATTTGAAGCTATGACGTTACCCAGCTTGTGGCCTGGCATGTTGGACTTGTG
genomic: GTATAGTTGTGGTGCTGCAACGAGGTTGAGGTTCTTCGATTGGACTGCAGgtttcctacg ... gacaccacagATTTGAAGCTATGACGTTACCCAGCTTGTGGCCTGGCATGTTGGACTTGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTCTTTGCTTCCAGTGGCTCTAGATGTGTTCGCGGAGGAGTCTCAGTGTATAGTTGTGGTGCTGCAACGAGGTTGAGGTTCTTCGATTGGACTGCAGgtttcctacggggttgaaactgagcagcttgcttgatccttgtcagtattttttttctttttttcttccatttcgctcacgtgatgcttgtttttttttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG