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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattaagtaatggggtttgccaatcttaaatgttttgtcagtagacttgggtgaagccatggacttgctgaatgctgaacgctgaacgtttactgtgcagGATTCAAACTTTATTGCCTGAGAAGTTGCAGTATCCTCTCTTGTTAACTGCGTAGCTGCGACAGATTTTAAGTAGAAGGATAGCTCCAGTTTTCTTACAA

Basic information

species Physcomitrella patens
transcript PP1S464_11V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162261651|gb|FC438084.1|FC438084
EST:     CGAGGCACGTTCGATTTGCGAGTTGGGTTCTGACCGGTGAATGTTCAATT                         GATTCAAACTTTATTGCCTGAGAAGTTGCAGTATCCTCTCTTGTTAACTGC
genomic: CGAGGCACGTTCGATTTGCGAGTTGGGTTCTGACCGGTGAATGTTCAATTgtgagtgaag ... tactgtgcagGATTCAAACTTTATTGCCTGAGAAGTTGCAGTATCCTCTCTTGTTAACTGC
EST: gi|22133095|gb|BQ827542.1|BQ827542
EST:     GTTGGGTTCTGACCGGTGAATGTTCAATT                         GATTCAAACTTTATTGCCTGAGAAGTTGCAGTATCCTCTCTTGTTAACTGC
genomic: GTTGGGTTCTGACCGGTGAATGTTCAATTgtgagtgaag ... tactgtgcagGATTCAAACTTTATTGCCTGAGAAGTTGCAGTATCCTCTCTTGTTAACTGC
EST: gi|18329266|gb|BJ161272.1|BJ161272
EST:     CGAGGCACGTTCGATTTGCGAGTTGGGTTCTGACCGGTGAATGTTCAATT                         GATTCAAACTTTATTGCCTGAGAAGTTGCAGTATCCTCTCTTGTTAACTGC
genomic: CGAGGCACGTTCGATTTGCGAGTTGGGTTCTGACCGGTGAATGTTCAATTgtgagtgaag ... tactgtgcagGATTCAAACTTTATTGCCTGAGAAGTTGCAGTATCCTCTCTTGTTAACTGC
EST: gi|22132588|gb|BQ827241.1|BQ827241
EST:     CGAGGCACGTTCGATTTGCGAGTTGGGTTCTGACCGGTGAATGTTCAATT                         GATTCAAACTTTATTGCCTGAGAAGTTGCAGTATCCTCTCTTGTTAACTGC
genomic: CGAGGCACGTTCGATTTGCGAGTTGGGTTCTGACCGGTGAATGTTCAATTgtgagtgaag ... tactgtgcagGATTCAAACTTTATTGCCTGAGAAGTTGCAGTATCCTCTCTTGTTAACTGC
EST: gi|162261421|gb|FC438257.1|FC438257
EST:     CGAGGCACGTTCGATTTGCGAGTTGGGTTCTGACCGGTGAATGTTCAATT                         GATTCAAACTTTATTGCCTGAGAAGTTGCAGTATCCTCTCTTGTTAACTGC
genomic: CGAGGCACGTTCGATTTGCGAGTTGGGTTCTGACCGGTGAATGTTCAATTgtgagtgaag ... tactgtgcagGATTCAAACTTTATTGCCTGAGAAGTTGCAGTATCCTCTCTTGTTAACTGC
EST: gi|162263496|gb|FC439434.1|FC439434
EST:     CCGGTGAATGTTCAATT                         GATTCAAACTTTATTGCCTGAGAAGTTGCAGTATCCTCTCTTGTTAACTGC
genomic: CCGGTGAATGTTCAATTgtgagtgaag ... tactgtgcagGATTCAAACTTTATTGCCTGAGAAGTTGCAGTATCCTCTCTTGTTAACTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tattaagtaatggggtttgccaatcttaaatgttttgtcagtagacttgggtgaagccatggacttgctgaatgctgaacgctgaacgtttactgtgcagGATTCAAACTTTATTGCCTGAGAAGTTGCAGTATCCTCTCTTGTTAACTGCGTAGCTGCGACAGATTTTAAGTAGAAGGATAGCTCCAGTTTTCTTACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa