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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCACTGCGGTGCCTCCCGCGGAGTTCCTGCAGAGCGAGTACCCCGACTTCTTCTTCAACATCACCAACTGCGGAAGGCCAAATTCAAGCGCATCTGTAAgtccacctccaccgtgtgactctcttcgcggctcgtgatgtgctcactgttccctgtgggccggccctcacccccagccgcgctcgacgacgtgctcatt...

Basic information

species Physcomitrella patens
transcript PP1S463_7V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S463_7V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ34147 (Selaginella moellendorffii), 5'ss of exon 1
GGCACTGCGGTGCCTCCCGCGGAGTTCCTGCAGAGCGAGTACCCCGACTTCTTCTTCAACATCACCAACTGCGG----------------AAGGCCAAATTCAAGCGCATCTGTAAgtccacctccaccgtgtgac---tctc----ttcgcggctc--gtgatgtgctcactgttccctgtgggccggcc-ctcacccccagccgcgctcgacgacgtgctcatt--------------
            || ||    ||||||   ||||||  |||||||||||||||||||||| ||||||| |||                  |||| ||| ||| ||||||||||||||||| || ||  ||  || |   || |    ||| | ||||  ||       || |  |||   || |    ||  ||| |  |    | ||     |   |   || ||              
------------CCGCCAAAAGAGTTCGACCAGAGCACGTACCCCGACTTCTTCTTCAACGTCACCAATTGCAATGAAAAGGTGGAGCTCAAGGGCAAGTTCCAGCGCATCTgtaagtcctccaccctcggatgcccggtcccggcattccccgctcacgtagaaaaatctcgtttcttcgtagcaaagcttctcgcttctgatcacgtcgtccctggatttcgtttctgcgcattgcag