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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAGATGGAACTACGCAAAGCGCAGTAAAGCTCCGAACGAGCATGCTATTCCACTTCTTCTGCCCCAGCATCACATGGTCATTCCTCACTATCTGACAGgtgagcgcgaattttctagtgatctgttttatttgataatctttcaattcctagttggagttttaagatgtgcctcttgctcttattcctttagaagctt...

Basic information

species Physcomitrella patens
transcript PP1S462_5V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162157125|gb|FC333695.1|FC333695
EST:     TCCACTTCTTCTGCCCCAGCATCACATGGTCATTCCTCACTATCTGACAG                         GTCGTGAGTCACTCGAAAATAAGTTGCAGGAACAACAACCTGCACAAGAGG
genomic: TCCACTTCTTCTGCCCCAGCATCACATGGTCATTCCTCACTATCTGACAGgtgagcgcga ... ttggttgcagGTCGTGAGTCACTCGAAAATAAGTTGCAGGAACAACAACCTGCACAAGAGG
EST: gi|100444868|gb|BY982696.1|BY982696
EST:     TCCACTTCTTCTGCCCCAGCATCACATGGTCATTCCTCACTATCTGACAG                         GTCGTGAGTCACTCGAAAATAAGTTGCAGGAACAACAACCTGCACAAGAGG
genomic: TCCACTTCTTCTGCCCCAGCATCACATGGTCATTCCTCACTATCTGACAGgtgagcgcga ... ttggttgcagGTCGTGAGTCACTCGAAAATAAGTTGCAGGAACAACAACCTGCACAAGAGG