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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtgggtcctgcctctgaaaccacataatatgctgcttatcagttggtgcttttgttgcgatggtcgtccaccttggatgagccaaagatatcgtcctatgcactgcagtcccatcccccctgaattcttggttgggttttcaagcttgactgatcaaataccaggacatttgaggttgtgactcagACTCGTGAGCAAGATGGCCGTGCGTGCAGTTAAAGATATTTTGTACAATATCCAAATCTTGGGGAGTCACAG

Basic information

species Physcomitrella patens
transcript PP1S462_23V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100382629|gb|BY986890.1|BY986890
EST:     TCTGTCGCTGTATATCTGTTTGGTCTTACCGGCTTTTTTCAGAACGCAAG                         ACTCGTGAGCAAGATGGCCGTGCGTGCAGTTAAAGATATTTTGTACAATAT
genomic: TCTGTCGCTGTATATCTGTTTGGTCTTACCGACTTTTTTCAGAACGCAAGgtgtgtgggt ... tgtgactcagACTCGTGAGCAAGATGGCCGTGCGTGCAGTTAAAGATATTTTGTACAATAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgggttttcaagcttgactgatcaaataccaggacatttgaggttgtgactcagACTCGTGAGCAAGATGGCCGTGCGTGCAGTTAAAGATATTTTGTACAATATCCAAATCTTGGGGAGTCACAG
                gactgat  putative branch site (score: 3)
                     atcaaata  TA-rich tract