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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatagacttttgggtatcctcgctttttgatcatgcgttactatgaggtctcatggtttagggcttttgctttcgtaattatttgcttcactctt...

Basic information

species Physcomitrella patens
transcript PP1S460_21V6.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37847045|gb|BJ605053.1|BJ605053
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|162218293|gb|FC394467.1|FC394467
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|162210751|gb|FC386647.1|FC386647
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|162172964|gb|FC347874.1|FC347874
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCANACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|162200373|gb|FC376372.1|FC376372
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|162200372|gb|FC376371.1|FC376371
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|208378297|gb|DC922996.1|DC922996
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|162210750|gb|FC386646.1|FC386646
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|162153016|gb|FC330046.1|FC330046
EST:     AGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: AGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|162218292|gb|FC394466.1|FC394466
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|37823510|gb|BJ581576.1|BJ581576
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|162280233|gb|FC456250.1|FC456250
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|162186579|gb|FC363343.1|FC363343
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|18340796|gb|BJ172827.1|BJ172827
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|67696472|gb|BJ956705.1|BJ956705
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|162183764|gb|FC360681.1|FC360681
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|162181413|gb|FC357117.1|FC357117
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|18334775|gb|BJ166792.1|BJ166792
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|162183765|gb|FC360682.1|FC360682
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
EST: gi|37836769|gb|BJ594777.1|BJ594777
EST:     CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAG                         GGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA
genomic: CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatag ... atgggtgtagGGCTCGGTTGTCATACGAGCAATTCAGCTCATTTTTAGCAAACATTAAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACGCACTACTCGACTTGATGGCAAGGAGTTCTTCCGTCAAGCTAGgtgcgtatagacttttgggtatcctcgctttttgatcatgcgttactatgaggtctcatggtttagggcttttgctttcgtaattatttgcttcactctt

- - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - CAAGCT