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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTTCGAAGAAGCTGCCAAGTACTACTTCGCATATATAAGTTTGGATTTTTTGTGGGAATTGAACCTCGCCGCGTTACTCTTGTTGAATTTCTTTGAAgtaagcttcatctaacagcttttcaagaccttgtttctattttttttcctgcacctcagagtttatcagagttgttataaacgtttcattcctcgcgacattgtttcgtttgttggctttgcag

Basic information

species Physcomitrella patens
transcript PP1S45_277V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18366595|gb|BJ198674.1|BJ198674
EST:     TTTTGTGGGAATTGAACCTCGCCGCGTTACTCTTGTTGAATTTCTTTGAA                         GTGCCTCTTTGGTGCAAGGAGAGCTTTCCAACACCATGTGGAGATAGAGAG
genomic: TTTTGTGGGAATTGAACCTCGCCGCGTTACTCTTGTTGAATTTCTTTGAAgtaagcttca ... ggctttgcagGTGCCTCTTTGGTGCAAGGAGAGCTTTCCAACACCATGTGGAGATAGAGAG
EST: gi|18331589|gb|BJ163600.1|BJ163600
EST:     TTTTGTGGGAATTGAACCTCGCCGCGTTACTCTTGTTGAATTTCTTTGAA                         GTGCCTCTTTGGTGCAAGGAGAGCTTTCCAACACCATGTGGAGATAGAGAG
genomic: TTTTGTGGGAATTGAACCTCGCCGCGTTACTCTTGTTGAATTTCTTTGAAgtaagcttca ... ggctttgcagGTGCCTCTTTGGTGCAAGGAGAGCTTTCCAACACCATGTGGAGATAGAGAG
EST: gi|18368749|gb|BJ200834.1|BJ200834
EST:     TTTTGTGGGAATTGAACCTCGCCGCGTTACTCTTGTTGAATTTCTTTGAA                         GTGCCTCTTTGGTGCAAGGAGAGCTTTCCAACACCATGTGGAGATAGAGAG
genomic: TTTTGTGGGAATTGAACCTCGCCGCGTTACTCTTGTTGAATTTCTTTGAAgtaagcttca ... ggctttgcagGTGCCTCTTTGGTGCAAGGAGAGCTTTCCAACACCATGTGGAGATAGAGAG
EST: gi|100434118|gb|BY978967.1|BY978967
EST:     TTTTGTGGGAATTGAACCTCGCCGCGTTACTCTTGTTGAATTTCTTTGAA                         GTGCCTCTTTGGTGCAAGGAGAGCTTTCCAACACCATGTGGAGATAGAGAG
genomic: TTTTGTGGGAATTGAACCTCGCCGCGTTACTCTTGTTGAATTTCTTTGAAgtaagcttca ... ggctttgcagGTGCCTCTTTGGTGCAAGGAGAGCTTTCCAACACCATGTGGAGATAGAGAG
EST: gi|100387275|gb|BY970419.1|BY970419
EST:     TTTTGTGGGAATTGAACCTCGCCGCGTTACTCTTGTTGAATTTCTTTGAA                         GTGCCTCTTTGGTGCAAGGAGAGCTTTCCAACACCATGTGGAGATAGAGAG
genomic: TTTTGTGGGAATTGAACCTCGCCGCGTTACTCTTGTTGAATTTCTTTGAAgtaagcttca ... ggctttgcagGTGCCTCTTTGGTGCAAGGAGAGCTTTCCAACACCATGTGGAGATAGAGAG